View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0729_high_5 (Length: 270)
Name: NF0729_high_5
Description: NF0729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0729_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 32103494 - 32103249
Alignment:
| Q |
1 |
ctaaacagtatcacaagtgtttatactggtagataaacataaatgagtctgtccagacaaacctatatcatgaactttattgtatgcaggcgttcaaaat |
100 |
Q |
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| T |
32103494 |
ctaaacagtatcacaagtgtttatactggtagataaacataa-tgagtctatccagacaaacctatatcacgaactttattgtatgcaggcgttcaagat |
32103396 |
T |
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| Q |
101 |
agctgtggccgattctgatacagtcttgagccctctaatgcgtgaaatcaaggaagttgatcctgatgggaaagcggtgaccaaggtggtacctgctgtg |
200 |
Q |
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| T |
32103395 |
agctgtggccaattctgatacggttttgagccctctaatgcgtgaaatcaaggaagttggtcctgatgggaaagcggtgaccaaggtggtaccttctgtg |
32103296 |
T |
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| Q |
201 |
tctgaagaagtgaagaattctctactgatgaacattagaagacgaat |
247 |
Q |
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| T |
32103295 |
tctgaagaaatgaagaattctctactgatgaacattagaagacgaat |
32103249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 247
Target Start/End: Complemental strand, 32109273 - 32109093
Alignment:
| Q |
67 |
atcatgaactttattgtatgcaggcgttcaaaatagctgtggccgattctgatacagtcttgagccctctaatgcgtgaaatcaaggaagttgatcctga |
166 |
Q |
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| T |
32109273 |
atcatgaactttattgtatgcaggcattcaaaattgttgtggcagatcctgataaggttttgagcactctcacgcgtgagatcaaggaagttggtcctga |
32109174 |
T |
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| Q |
167 |
tgggaaagcggtgaccaaggtggtacctgctgtgtctgaagaagtgaagaattctctactgatgaacattagaagacgaat |
247 |
Q |
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| T |
32109173 |
tgggcaagaagtgaccaaggtggtacctgctgtatctgaagaactgaaggattctctggtgaataatattagaagacgaat |
32109093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 74 - 247
Target Start/End: Complemental strand, 32117544 - 32117371
Alignment:
| Q |
74 |
actttattgtatgcaggcgttcaaaatagctgtggccgattctgatacagtcttgagccctctaatgcgtgaaatcaaggaagttgatcctgatgggaaa |
173 |
Q |
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|||||||||| | ||||||||||||| || | |||| ||| ||||| | || |||||| | || | |||||||||||||||||||| |||||||||| || |
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| T |
32117544 |
actttattgtgtacaggcgttcaaaagagttttggctgatcctgatgcggttttgagcgcactcacgcgtgaaatcaaggaagttggtcctgatgggcaa |
32117445 |
T |
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| Q |
174 |
gcggtgaccaaggtggtacctgctgtgtctgaagaagtgaagaattctctactgatgaacattagaagacgaat |
247 |
Q |
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| T |
32117444 |
gaagtgactaaggtggtacctgctgtatctgaagaagtgaaggaatctctactgatgaatattagaagacgaat |
32117371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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