View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0729_low_1 (Length: 556)

Name: NF0729_low_1
Description: NF0729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0729_low_1
NF0729_low_1
[»] chr7 (5 HSPs)
chr7 (30-478)||(9948510-9948958)
chr7 (400-475)||(9942677-9942752)
chr7 (371-478)||(1032145-1032248)
chr7 (443-478)||(28782087-28782122)
chr7 (377-451)||(17193991-17194065)
[»] scaffold0300 (1 HSPs)
scaffold0300 (376-478)||(9503-9605)
[»] chr5 (4 HSPs)
chr5 (376-478)||(22639485-22639587)
chr5 (376-478)||(19021316-19021417)
chr5 (421-478)||(39143292-39143349)
chr5 (376-478)||(6537003-6537105)
[»] chr4 (7 HSPs)
chr4 (376-478)||(36651813-36651915)
chr4 (376-478)||(43499223-43499325)
chr4 (376-478)||(7743498-7743600)
chr4 (376-478)||(42718496-42718599)
chr4 (376-475)||(9896583-9896680)
chr4 (376-478)||(39059795-39059895)
chr4 (376-432)||(37870776-37870832)
[»] chr2 (6 HSPs)
chr2 (376-478)||(12410713-12410815)
chr2 (376-478)||(12422773-12422875)
chr2 (376-478)||(37647891-37647993)
chr2 (376-478)||(6764346-6764448)
chr2 (376-478)||(27271565-27271668)
chr2 (376-437)||(11031704-11031765)
[»] chr1 (4 HSPs)
chr1 (376-478)||(4532159-4532261)
chr1 (376-478)||(51534550-51534652)
chr1 (376-432)||(34549277-34549333)
chr1 (442-478)||(33766348-33766384)
[»] chr8 (6 HSPs)
chr8 (376-478)||(8444332-8444434)
chr8 (376-478)||(24503980-24504082)
chr8 (376-478)||(45540241-45540344)
chr8 (388-451)||(45547846-45547909)
chr8 (372-432)||(13089905-13089965)
chr8 (376-432)||(4034419-4034475)
[»] chr6 (1 HSPs)
chr6 (376-432)||(12912378-12912434)
[»] scaffold0037 (1 HSPs)
scaffold0037 (376-432)||(891-947)


Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 478
Target Start/End: Original strand, 9948510 - 9948958
Alignment:
Q  30 aatggtacgatggagtatttagggggtgatttatgtatttgggagaattttcaaactggttatcttacaaagcttatacttgaatatttggtcaaaagat 129  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9948510 aatggtatgatggagtatttaggaggtgatttatgtatttgggagaattttcaaaccggttatcttacaaagcttatacttgaatatttggtcaaaagat 9948609  T
Q  130 gcataagatatcacaacattgagagcatatggtggtttgatcttgacaatggaaagtttattgagttgttgaatgatgaagacatcatagatatgtgtat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9948610 gcataagatatcacaacattgagagcatatggtggtttgatcttgacaatggaaagtttattgagttgttgaatgatgaagacatcaaagatatgtgtat 9948709  T
Q  230 cagtgctattcaccacaatcatgaagttcatgtttattttacacaccaaatatcagtgccaaaaattgttgcacctccatctccctgataatatggtggt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9948710 cagtgctattcaccacaatcatgaagttcatgtttattttacacaccaaatatcagtgccaaaaattgttgcacctccatctccctgataacatggtggt 9948809  T
Q  330 ctgcctatgaagcacggacactttttgaattatgcgtgtcttatttatggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagcct 429  Q
    | | ||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9948810 cagtctatgaagcaccgatactttttggattatgcgtgtcttattcatggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagcct 9948909  T
Q  430 tctattttgttcatgttttggccatttggcactcttgtaattgactctt 478  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9948910 tctattttgttcatgttttggccttttggcactcttgtaattgactctt 9948958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 9942752 - 9942677
Alignment:
Q  400 cttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  9942752 cttaggaatatttatgtaacagagtagccttcttttttgttcttgttttggccttttggcactcttgtaattgact 9942677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 478
Target Start/End: Original strand, 1032145 - 1032248
Alignment:
Q  371 tatttatggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-atttggcactcttgtaa 469  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||     | |||||||||||||||||||  ||||||| ||||||||    
T  1032145 tattcatggtggttgaaccatttaccttgcttaggaatatttatgtaacagggtag-----ttttttgttcatgttttggccgttttggcattcttgtaa 1032239  T
Q  470 ttgactctt 478  Q
    |||||||||    
T  1032240 ttgactctt 1032248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 28782122 - 28782087
Alignment:
Q  443 tgttttggccatttggcactcttgtaattgactctt 478  Q
    |||||||||| |||||||||||||||||||||||||    
T  28782122 tgttttggccttttggcactcttgtaattgactctt 28782087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 451
Target Start/End: Complemental strand, 17194065 - 17193991
Alignment:
Q  377 tggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggc 451  Q
    ||||||||||| ||||||| ||| || ||||||||| ||||| |||||||| |||| |||||  | |||||||||    
T  17194065 tggtggttgaatcctttaccttgtttgggaatatttttgtaatagggtagctttcttttttgagcttgttttggc 17193991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 9503 - 9605
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  9503 atggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagtcttctattttgttcatgttttggccatttggcactcttgtaactgact 9602  T
Q  476 ctt 478  Q
    |||    
T  9603 ctt 9605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 22639485 - 22639587
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  22639485 atggtggttgaaccatttaccttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggctatttggcactcttgtaactgact 22639584  T
Q  476 ctt 478  Q
    |||    
T  22639585 ctt 22639587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 19021316 - 19021417
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||| || |||||||||||||||||||    
T  19021316 atggtggttgaaccctttaccttgcttaggaatatt-atgtaactgggtagcctttttttttgttcatgttttggcctttcggcactcttgtaattgact 19021414  T
Q  476 ctt 478  Q
    |||    
T  19021415 ctt 19021417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 39143349 - 39143292
Alignment:
Q  421 gggtagccttctattttgttcatgttttggccatttggcactcttgtaattgactctt 478  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39143349 gggtagccttctattttgttcatgttttggccttttggcactcttgtaattgactctt 39143292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 6537003 - 6537105
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-atttggcactcttgtaattgac 474  Q
    |||||||||||||||||||| ||||||   ||||||||| ||||| ||||||||| | |||||||  ||||||||||  |||| || | |||||||||||    
T  6537003 atggtggttgaaccctttaccttgcttgataatatttatataacatggtagcctt-ttttttgtttctgttttggcctttttgacatttttgtaattgac 6537101  T
Q  475 tctt 478  Q
    ||||    
T  6537102 tctt 6537105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 478
Target Start/End: Complemental strand, 36651915 - 36651813
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36651915 atggtggttgaaccctttaccttgcttaggaatatttatgtaacatggtaaccttctattttgttcatgttttggccatttggcactcttgtaactgact 36651816  T
Q  476 ctt 478  Q
    |||    
T  36651815 ctt 36651813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 43499223 - 43499325
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  43499223 atggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagccttcttttttgttcttgttttggccttttggcactcttgtaattgact 43499322  T
Q  476 ctt 478  Q
    |||    
T  43499323 ctt 43499325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 7743498 - 7743600
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||    
T  7743498 atggtggttgaaccctttaccttgtttaggaatatttatgtagcagggtagccttcttttttgttcttgttttggccttttgacactcttgtaattgact 7743597  T
Q  476 ctt 478  Q
    |||    
T  7743598 ctt 7743600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 42718496 - 42718599
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttc-tattttgttcatgttttggccatttggcactcttgtaattgac 474  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||| |||||||||||| ||||| ||    
T  42718496 atggtggttgaaccctttaccttgcttaggaatatttatgtaacggggtagccttctttttttgttcttgttttggccttttggcactcttataattaac 42718595  T
Q  475 tctt 478  Q
    ||||    
T  42718596 tctt 42718599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 376 - 475
Target Start/End: Complemental strand, 9896680 - 9896583
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggc-catttggcactcttgtaattgac 474  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||   |||||||| |||||||||   ||||||| ||||| |||||||    
T  9896680 atggtggttgaaccctttaccttgcttgggaatatttatgtaacagggtagcctt---ttttgttcctgttttggcagttttggcattcttgcaattgac 9896584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 478
Target Start/End: Complemental strand, 39059895 - 39059795
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-atttggcactcttgtaattgac 474  Q
    |||||||||||||| ||||| |||| |  ||||||||||||||||| ||||||||   |||||||| ||||||||||  |||| || |||||||||| ||    
T  39059895 atggtggttgaaccatttaccttgcctgcgaatatttatgtaacagagtagcctt---ttttgttcctgttttggccgttttgacattcttgtaattaac 39059799  T
Q  475 tctt 478  Q
    ||||    
T  39059798 tctt 39059795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 37870832 - 37870776
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 432  Q
    |||||||||||| ||||||| ||||||  |||||||| |||||||||| ||| ||||    
T  37870832 atggtggttgaatcctttaccttgcttgagaatatttttgtaacagggcagcattct 37870776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 5e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 12410713 - 12410815
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  12410713 atggtggttgaaccctttaccttgcttaggaatatttatgtaacaaggtagccttcttttttgttcttgttttggccttttggcactcttgtaattgact 12410812  T
Q  476 ctt 478  Q
    |||    
T  12410813 ctt 12410815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 12422773 - 12422875
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  12422773 atggtggttgaaccctttaccttgcttaggaatatttatgtaacaaggtagccttcttttttgttcttgttttggccttttggcactcttgtaattgact 12422872  T
Q  476 ctt 478  Q
    |||    
T  12422873 ctt 12422875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 37647891 - 37647993
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  37647891 atggtggttggaccctttaccttgcttaggaatatttatgtaacatggtagccttcttttttgttcatgttttggccttttgacactcttgtaattgact 37647990  T
Q  476 ctt 478  Q
    |||    
T  37647991 ctt 37647993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 6764346 - 6764448
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||    
T  6764346 atggtggttgaaccctttaccttgcttatgaatatttatgtagcagggtagccttattttttgttcttgttttggccttttggcactcttgtaattgact 6764445  T
Q  476 ctt 478  Q
    |||    
T  6764446 ctt 6764448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 27271565 - 27271668
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcca-tttggcactcttgtaattgac 474  Q
    |||||||||||||||||||| |||||| |||||| |||||||||| | ||| ||||| |||| ||| ||||||||||| |||| |||| ||| |||||||    
T  27271565 atggtggttgaaccctttaccttgcttgggaatacttatgtaacaagatagtcttcttttttattcctgttttggccattttgacacttttggaattgac 27271664  T
Q  475 tctt 478  Q
    ||||    
T  27271665 tctt 27271668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 11031704 - 11031765
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 437  Q
    |||||||||||| | ||||| |||||| ||||||||| |||||||||| ||| |||| ||||    
T  11031704 atggtggttgaatcatttaccttgcttgggaatatttttgtaacagggcagcattctttttt 11031765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 376 - 478
Target Start/End: Complemental strand, 4532261 - 4532159
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    ||||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4532261 atggtggttgaacccttcaccttgcttaggaatatttatgtaacaaggtatccttctattttgttcatgttttggccatttggtactcttgtaattgact 4532162  T
Q  476 ctt 478  Q
    |||    
T  4532161 ctt 4532159  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 376 - 478
Target Start/End: Complemental strand, 51534652 - 51534550
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    |||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  51534652 atggtgattgaaccctttaccttgcttaggaatatttatgtaatagggtagcattctattttgttcatgttttggccttttggcactcttgtaattgact 51534553  T
Q  476 ctt 478  Q
    |||    
T  51534552 ctt 51534550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 34549277 - 34549333
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 432  Q
    |||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  34549277 atggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 34549333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 33766348 - 33766384
Alignment:
Q  442 atgttttggccatttggcactcttgtaattgactctt 478  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  33766348 atgttttggccttttgacactcttgtaattgactctt 33766384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 478
Target Start/End: Complemental strand, 8444434 - 8444332
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  8444434 atggttgttgaactctttaccttgcttaggaatatttatgtaacaggatagccttctattttgttcatgttttaaccatttggcactcttgtaattgact 8444335  T
Q  476 ctt 478  Q
    |||    
T  8444334 ctt 8444332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 24503980 - 24504082
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggccatttggcactcttgtaattgact 475  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||||||    
T  24503980 atggtggctgaaccctttaccttgtttaggaatatttatgtaacagggtagccttcttttttgttcttgttttggccttttggcacacttgtaattgact 24504079  T
Q  476 ctt 478  Q
    |||    
T  24504080 ctt 24504082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 478
Target Start/End: Original strand, 45540241 - 45540344
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggcc-atttggcactcttgtaattgac 474  Q
    |||||||||||||||||||| |||||| ||||||||||  ||||| |||||| |||| |||||||| | ||||||||  ||| ||| ||||| |||||||    
T  45540241 atggtggttgaaccctttaccttgcttgggaatatttacataacatggtagctttcttttttgttcctattttggccgttttagcattcttgcaattgac 45540340  T
Q  475 tctt 478  Q
    ||||    
T  45540341 tctt 45540344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 45547846 - 45547909
Alignment:
Q  388 ccctttactttgcttaggaatatttatgtaacagggtagccttctattttgttcatgttttggc 451  Q
    |||||||| |||||| |||||||||| ||||||||||||| |||| |||||||| |||||||||    
T  45547846 ccctttaccttgcttgggaatatttacgtaacagggtagctttcttttttgttcctgttttggc 45547909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 432
Target Start/End: Complemental strand, 13089965 - 13089905
Alignment:
Q  372 atttatggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 432  Q
    |||||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  13089965 atttatggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 13089905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 4034475 - 4034419
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 432  Q
    |||||||||||| | ||||| |||||| ||||||||| |||||||||| ||| ||||    
T  4034475 atggtggttgaatcatttaccttgcttgggaatatttctgtaacagggcagcattct 4034419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 432
Target Start/End: Complemental strand, 12912434 - 12912378
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 432  Q
    |||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  12912434 atggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 12912378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 891 - 947
Alignment:
Q  376 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 432  Q
    |||||||||||| |||| || |||||| ||||||||| |||||||||| ||| ||||    
T  891 atggtggttgaatccttaaccttgcttgggaatatttttgtaacagggcagcattct 947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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