View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0729_low_10 (Length: 324)
Name: NF0729_low_10
Description: NF0729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0729_low_10 |
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| [»] scaffold0171 (2 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: scaffold0171 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 302
Target Start/End: Complemental strand, 19195 - 18910
Alignment:
| Q |
17 |
tatcaagtagatccttaatatgagcaccttcacccttttccttccttttattcctttattcttgatgatcccttatcaccctctccatcaatgtgtcaaa |
116 |
Q |
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| T |
19195 |
tatcaagtagatccctaacatgatcaccttcacccttttctttccttttcttcatttccacttgatgctcccttatcaccctctccatcaatgtgtcaaa |
19096 |
T |
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| Q |
117 |
cctctccataacccctttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaacaaaatccgacaaattaaacctccctgaaagctct |
216 |
Q |
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| T |
19095 |
cctctccataaccactttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctct |
18996 |
T |
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| Q |
217 |
acactatcttgcaccatcttcctaatgtcttccacatcgctatcgttttcagcacatgttttactcattgccatagttgtgatgat |
302 |
Q |
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| T |
18995 |
acactatcttgcaccatcttcctaatgtcttccacatcgctatcgttttcagcacatgttttactcattgccatagttgtgatgat |
18910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 24604 - 24367
Alignment:
| Q |
17 |
tatcaagtagatccttaatatgagcaccttcacccttttccttccttttattcctttattcttgatgatcccttatcaccctctccatcaatgtgtcaaa |
116 |
Q |
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| T |
24604 |
tatcaagcaaatccttaacatgagcaccttcgccattttcctttcttttcttcatttcctcttgatgctcccttatgacactctcaatcattgtgtcgaa |
24505 |
T |
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| Q |
117 |
cctctccataacccctttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaacaaaatccgacaaattaaacctccctgaaagctct |
216 |
Q |
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| T |
24504 |
catgttcataagctcttttagccttttgttaaatccttgcaaatcccaattcttaaaaaaccaaataaaatccgacaaattaaactgccctccaagttct |
24405 |
T |
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| Q |
217 |
acactatcttgcaccatcttcctaatgtcttccacatc |
254 |
Q |
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| T |
24404 |
gaacaatctttaaccaacttcctaatgtcttccacatc |
24367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 290
Target Start/End: Original strand, 11168 - 11382
Alignment:
| Q |
76 |
tcttgatgatcccttatcaccctctccatcaatgtgtcaaacctctccataacccctttaagccttttgttaaatccttgcatatcccaattcttaaaaa |
175 |
Q |
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| T |
11168 |
tcttgatgttcccttatggccctctccaacattatgtcaaacctttccatagcaactttaagccttttatgtattccttgtaaatccaaattcttgcaaa |
11267 |
T |
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| Q |
176 |
accaaacaaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcctaatgtcttccacatcgctatcgttttcagcacatgt |
275 |
Q |
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| T |
11268 |
cccaaataaaatctgacacattaaacgtccctccaagctctaaaatgtccttcagcatctccctaatttcttcaacttcactatcattttcagaacatgt |
11367 |
T |
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| Q |
276 |
tttactcattgccat |
290 |
Q |
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|||||| |||||||| |
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| T |
11368 |
tttacttattgccat |
11382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 245
Target Start/End: Complemental strand, 24940084 - 24939931
Alignment:
| Q |
92 |
tcaccctctccatcaatgtgtcaaacctctccataacccctttaagccttttgttaaatccttgcatatcccaattcttaaaaaaccaaacaaaatccga |
191 |
Q |
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|||| |||||||||| | |||||||||| ||| ||| | |||||||||||| || | ||| | | |||| |||||||| ||||||||| ||||||||| |
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| T |
24940084 |
tcactctctccatcattttgtcaaacctgtccctaattcttttaagccttttattcattccataaaaatccaaattcttacaaaaccaaataaaatccga |
24939985 |
T |
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| Q |
192 |
caaattaaacctccctgaaagctctacactatcttgcaccatcttcctaatgtc |
245 |
Q |
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| T |
24939984 |
cacattaaacttccctgcaagctcggcagtgtctgtcaccatcttccgaatgtc |
24939931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 38808620 - 38808719
Alignment:
| Q |
17 |
tatcaagtagatccttaatatgagcaccttcacccttttccttcctt-ttattcctttattcttgatgatcccttatcaccctctccatcaatgtgtcaa |
115 |
Q |
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| T |
38808620 |
tatcaagcagatccctaacacaagcaccttcaccactttccttccttattcctcctttcctcttgatgctcccttatcaccctctccatcattgtgtcaa |
38808719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 36734235 - 36734155
Alignment:
| Q |
159 |
atcccaattcttaaaaaaccaaacaaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcct |
239 |
Q |
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|||||| |||||||||||||||| |||||| || | ||||||| |||| | ||| | |||| | |||||||||| |||||| |
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| T |
36734235 |
atcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtcttgcaccaacttcct |
36734155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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