View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0729_low_11 (Length: 312)
Name: NF0729_low_11
Description: NF0729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0729_low_11 |
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| [»] scaffold0576 (2 HSPs) |
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Alignment Details
Target: scaffold0576 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 8073 - 8247
Alignment:
| Q |
15 |
agatggacatcatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttcca |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
8073 |
agatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttcca |
8172 |
T |
|
| Q |
115 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8173 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt |
8247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 166 - 291
Target Start/End: Original strand, 8258 - 8383
Alignment:
| Q |
166 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
265 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8258 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
8357 |
T |
|
| Q |
266 |
aagtttcctcaattctaatgatgatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
8358 |
aagtttcctcaattctaatgatgatg |
8383 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 15363302 - 15363476
Alignment:
| Q |
15 |
agatggacatcatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttcca |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
15363302 |
agatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttcca |
15363401 |
T |
|
| Q |
115 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15363402 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt |
15363476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 166 - 291
Target Start/End: Original strand, 15363487 - 15363612
Alignment:
| Q |
166 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15363487 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
15363586 |
T |
|
| Q |
266 |
aagtttcctcaattctaatgatgatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
15363587 |
aagtttcctcaattctaatgatgatg |
15363612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 7406267 - 7406093
Alignment:
| Q |
15 |
agatggacatcatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttcca |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
7406267 |
agatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttcca |
7406168 |
T |
|
| Q |
115 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7406167 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt |
7406093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 7406082 - 7405957
Alignment:
| Q |
166 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7406082 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
7405983 |
T |
|
| Q |
266 |
aagtttcctcaattctaatgatgatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7405982 |
aagtttcctcaattctaatgatgatg |
7405957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 1655887 - 1656005
Alignment:
| Q |
51 |
taatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaa |
150 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1655887 |
taatagttagtttaataattctaaataatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaa |
1655986 |
T |
|
| Q |
151 |
aatccaagggtctgcatgt |
169 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1655987 |
aatccaagggtctgcatgt |
1656005 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 17303656 - 17303810
Alignment:
| Q |
15 |
agatggacatcatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttcca |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17303656 |
agatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttcca |
17303755 |
T |
|
| Q |
115 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
169 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17303756 |
gaataagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
17303810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 25639937 - 25640053
Alignment:
| Q |
166 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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|
| T |
25639937 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatatatatctcagcatctaccattccaagagcaacaccac |
25640036 |
T |
|
| Q |
266 |
aagtttcctcaattcta |
282 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
25640037 |
aagtttcctcaattcta |
25640053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 17253306 - 17253447
Alignment:
| Q |
26 |
atcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtaca |
125 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| || ||| ||||||||| || ||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
17253306 |
atcataaatattgccgaagctctcctaatatctagattcatatttctaaacattggcacatcacaatgtcaaaggacaccta--ttccagaacaagtaca |
17253403 |
T |
|
| Q |
126 |
ttcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
169 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
17253404 |
ttcaaggcaagaaaatgaccagtgaaatccaagggtctgcatgt |
17253447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 166
Target Start/End: Original strand, 17242420 - 17242471
Alignment:
| Q |
115 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgca |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
17242420 |
gaacaagtacattcaaggcaagaaaatgaccggtgaaatccaagggtctgca |
17242471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 4684750 - 4684596
Alignment:
| Q |
15 |
agatggacatcatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttcca |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
4684750 |
agatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattagaatgccaaaggacacctattttcca |
4684651 |
T |
|
| Q |
115 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684650 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
4684596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 166 - 291
Target Start/End: Complemental strand, 4683892 - 4683767
Alignment:
| Q |
166 |
atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
265 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4683892 |
atgtctattgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac |
4683793 |
T |
|
| Q |
266 |
aagtttcctcaattctaatgatgatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4683792 |
aagtttcctcaattctaatgatgatg |
4683767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 24712108 - 24712070
Alignment:
| Q |
230 |
atatctcagcatctaccattccaagagtaacaccacaag |
268 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
24712108 |
atatttcagcatctaccattctaagagtaacaccacaag |
24712070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 31341245 - 31341091
Alignment:
| Q |
15 |
agatggacatcatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttcca |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31341245 |
agatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttcca |
31341146 |
T |
|
| Q |
115 |
gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt |
169 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31341145 |
gaacaagtgcattcaaggcaagaaaatgaaccgtaaaatccaagggtccgcatgt |
31341091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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