View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0729_low_12 (Length: 284)
Name: NF0729_low_12
Description: NF0729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0729_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 57 - 237
Target Start/End: Complemental strand, 29272395 - 29272215
Alignment:
| Q |
57 |
tcatcaaacagctgcaacgcaagattcacatctcctagcacacaataccctttcattaagcttctcgtaacaattacattcataggtaaaccaacgctca |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29272395 |
tcatcaaacagctgcaacgcaagattcacatctcctagcacacaataccctttcattaagcttctcgtaacaattacgttcataggtaaaccaacgctca |
29272296 |
T |
|
| Q |
157 |
ccatctcatccttaagcctcaacgcctccacaaaattcccctgcttcacacaagcaacaataacagcagtatatgtaccct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29272295 |
ccatctcatccttaagcctcaacgcctccacaaaattcccctgcttcacacaagcaacaataacagcagtatatgtaccct |
29272215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 29270172 - 29270040
Alignment:
| Q |
57 |
tcatcaaacagctgcaacgcaagattcacatctcctagcacacaataccctttcattaagcttctcgtaacaattacattcataggtaaaccaacgctca |
156 |
Q |
| |
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|||||||||| |||| ||||||| |||||| |||||| |||||||| |||||||| |||||||| | ||||||||||||||| |||||| ||||||||| |
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| T |
29270172 |
tcatcaaacaactgcgccgcaagaatcacatatcctagaacacaatatcctttcatcaagcttcttgcaacaattacattcatcggtaaatcaacgctca |
29270073 |
T |
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| Q |
157 |
ccatctcatccttaagcctcaacgcctccacaa |
189 |
Q |
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|||||| || |||| |||| ||||||| |||| |
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| T |
29270072 |
ccatctagtcattaaacctcgacgcctctacaa |
29270040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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