View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0729_low_2 (Length: 511)

Name: NF0729_low_2
Description: NF0729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0729_low_2
NF0729_low_2
[»] chr6 (13 HSPs)
chr6 (29-501)||(1442091-1442563)
chr6 (134-358)||(7564886-7565107)
chr6 (369-496)||(176270-176397)
chr6 (369-482)||(1470925-1471038)
chr6 (291-358)||(370920-370987)
chr6 (287-358)||(1459676-1459747)
chr6 (439-496)||(7564739-7564796)
chr6 (439-487)||(370782-370830)
chr6 (287-358)||(1471058-1471129)
chr6 (369-482)||(1459543-1459656)
chr6 (135-200)||(176000-176065)
chr6 (429-482)||(1453842-1453895)
chr6 (429-482)||(1465534-1465587)
[»] chr4 (4 HSPs)
chr4 (134-267)||(55419477-55419610)
chr4 (371-482)||(55419720-55419831)
chr4 (439-489)||(20019767-20019817)
chr4 (445-489)||(20016180-20016224)
[»] chr7 (3 HSPs)
chr7 (143-267)||(3926763-3926887)
chr7 (439-482)||(3927065-3927108)
chr7 (291-343)||(3926908-3926960)
[»] chr3 (12 HSPs)
chr3 (443-489)||(2442049-2442095)
chr3 (439-484)||(9608344-9608389)
chr3 (439-482)||(2456255-2456298)
chr3 (439-482)||(3754606-3754649)
chr3 (443-494)||(4142124-4142175)
chr3 (439-489)||(968677-968727)
chr3 (443-489)||(4157939-4157985)
chr3 (439-488)||(997582-997631)
chr3 (439-488)||(1013972-1014021)
chr3 (443-484)||(13498234-13498275)
chr3 (443-480)||(44001605-44001642)
chr3 (439-491)||(803211-803263)
[»] chr5 (5 HSPs)
chr5 (443-484)||(20293005-20293046)
chr5 (443-484)||(20305866-20305907)
chr5 (443-484)||(20310270-20310311)
chr5 (439-482)||(11081819-11081862)
chr5 (443-484)||(20301453-20301494)
[»] chr2 (2 HSPs)
chr2 (443-492)||(6538844-6538893)
chr2 (433-492)||(20538018-20538077)
[»] scaffold0044 (1 HSPs)
scaffold0044 (439-482)||(89149-89192)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 29 - 501
Target Start/End: Complemental strand, 1442563 - 1442091
Alignment:
Q  29 aactaccatataaaactggttacagcatcgggtatgacagttccattgataattacaaagtacttgctgttacatgctatcgatctgatataaccaactg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1442563 aactaccatataaaactggttacagcatcgggtatgacagttccattgataattacaaagtacttgctgttacattctatcgatctgatataaccaactg 1442464  T
Q  129 ttttagcaaaactgaagttagggttcatactttaggtactaatttttggaaaaggatcccagacttcccttctgaaatcatggatgtagccgattggtgt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1442463 ttttagcaaaactgaagttagggttcatactttaggtactaatttttggaaaaggatcccagacttcccttctgaaatcatggatgtagccgattggtgt 1442364  T
Q  229 catgggatatttttaagtggcaccattaattgggccatacggcgagatcaaagaaaacactcttcatggattattctctctcttgatttagaaaaagagt 328  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1442363 catgggatatttttaagtggcaccattaattgggccatacggtgagatcaaagaaaacactcttcatggattattctctctcttgatttagaaaaagagt 1442264  T
Q  329 cttatcaagagattttgctgcctgattatgctcccccatttaacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctat 428  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1442263 cttatcaagagattttgttgcctgattatgctcctccatttaacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggaactat 1442164  T
Q  429 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaattattcactgttccatctctg 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1442163 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaattgttcactgttccatctctg 1442091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 358
Target Start/End: Complemental strand, 7565107 - 7564886
Alignment:
Q  134 gcaaaactgaagttagggttcatactttaggtactaatttttggaaaaggatcccagacttcccttctgaaatcatggatgtagccgattggtgtcatgg 233  Q
    |||||||| |||||| |||||||||||||||||  ||| |||||| |||||| ||||||||||||||||||| || || |||| | ||  |  ||  |||    
T  7565107 gcaaaactcaagttaaggttcatactttaggtagcaatgtttggagaaggattccagacttcccttctgaaaacaagggtgtacctgaaggacgtgttgg 7565008  T
Q  234 gatatttttaagtggcaccattaattgggccatacggcgagatcaaagaaaacactcttcatggattattctctctcttgatttagaaaaagagtcttat 333  Q
    || |||| |||||||| ||||| |||||| ||||     |||||||   ||  ||||||||||| | ||||| || ||||||||||  || |||||||||    
T  7565007 gaaatttgtaagtggcgccattcattgggtcata---aaagatcaagataatgactcttcatgggtcattctttcccttgatttaggtaacgagtcttat 7564911  T
Q  334 caagagattttgctgcctgattatg 358  Q
    ||||||||||||| ||| |||||||    
T  7564910 caagagattttgcagccagattatg 7564886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 496
Target Start/End: Original strand, 176270 - 176397
Alignment:
Q  369 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagat 468  Q
    |||||| |||||||||||||| |  |||||| ||||| |||||||||| | || | || |||||||||  |||  |||||| |||||||||| |||||||    
T  176270 taacttcagcttgggggtttctagggattgcctatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagat 176369  T
Q  469 tcttggactaaattattcactgttccat 496  Q
    |||||||||||||| |||||| ||||||    
T  176370 tcttggactaaattgttcactcttccat 176397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 482
Target Start/End: Complemental strand, 1471038 - 1470925
Alignment:
Q  369 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagat 468  Q
    |||||| |||||||||||||| |  |||| |||||||||||||||||| | |  | || |||||||||  ||||||||||| |||||||||| |||||||    
T  1471038 taactttagcttgggggtttctagggattacttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagat 1470939  T
Q  469 tcttggactaaatt 482  Q
    |||||| |||||||    
T  1470938 tcttggtctaaatt 1470925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 370987 - 370920
Alignment:
Q  291 ttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgctgcctgattatg 358  Q
    ||||||| | ||||| |||||||||||||||||||||| |||||||||||||| || |||||||||||    
T  370987 ttcatgggtcattctttctcttgatttagaaaaagagtattatcaagagatttcgcagcctgattatg 370920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 1459747 - 1459676
Alignment:
Q  287 actcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgctgcctgattatg 358  Q
    |||||||| || | ||||| ||||||||||||| ||| |||||||||||||||||||||| |||| ||||||    
T  1459747 actcttcacgggtcattctttctcttgatttaggaaacgagtcttatcaagagattttgcagcctaattatg 1459676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 496
Target Start/End: Complemental strand, 7564796 - 7564739
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaattattcactgttccat 496  Q
    ||||||||||||||||||||||  || ||||||||||||||||| |||| ||||||||    
T  7564796 tgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttccat 7564739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 370830 - 370782
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaattattca 487  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  370830 tgggttatgaagaattatggaaataaagattcttggactaaattgttca 370782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 1471129 - 1471058
Alignment:
Q  287 actcttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattttgctgcctgattatg 358  Q
    |||||||| || | ||||| |||||| |||||| ||| |||||||||||||||||||| | |||||||||||    
T  1471129 actcttcacgggtcattctttctcttaatttaggaaacgagtcttatcaagagattttacagcctgattatg 1471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 482
Target Start/End: Complemental strand, 1459656 - 1459543
Alignment:
Q  369 taacttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagat 468  Q
    |||||| |||||||||||||  |  |||| ||||||| |||||||||| |    | || |||||||||  ||||||||||| |||| ||||| ||||||     
T  1459656 taactttagcttgggggtttatagggattacttatgcgtccttgctcatacaaaatcttttttggatatttgggttatgaaagattttggaaataaagaa 1459557  T
Q  469 tcttggactaaatt 482  Q
    ||||||||||||||    
T  1459556 tcttggactaaatt 1459543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 176000 - 176065
Alignment:
Q  135 caaaactgaagttagggttcatactttaggtactaatttttggaaaaggatcccagacttcccttc 200  Q
    ||||||| |||||| |||||| |||||||| || || | ||||| |||||| ||||||||||||||    
T  176000 caaaactcaagttaaggttcacactttaggcaccaactcttggagaaggattccagacttcccttc 176065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 482
Target Start/End: Complemental strand, 1453895 - 1453842
Alignment:
Q  429 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 482  Q
    ||||||||  |||||||||||| ||||||||| |||||| ||||||| ||||||    
T  1453895 tttggatatctgggttatgaagtattatggaaataaagactcttggaataaatt 1453842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 482
Target Start/End: Complemental strand, 1465587 - 1465534
Alignment:
Q  429 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 482  Q
    ||||||||  |||||||||||| ||||||||| |||||| ||||||| ||||||    
T  1465587 tttggatatctgggttatgaagtattatggaaataaagactcttggaataaatt 1465534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 134 - 267
Target Start/End: Original strand, 55419477 - 55419610
Alignment:
Q  134 gcaaaactgaagttagggttcatactttaggtactaatttttggaaaaggatcccagacttcccttctgaaatcatggatgtagccgattggtgtcatgg 233  Q
    |||||||| ||||||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||||||| || | |  ||||   |||||  ||    
T  55419477 gcaaaactcaagttagggctcatactttaggtaccaacttttggaaaaggataccagacttcccttctgaaatcacgggtttgcccgaagagtgtccggg 55419576  T
Q  234 gatatttttaagtggcaccattaattgggccata 267  Q
    || |||| ||||||||||||||||||||||||||    
T  55419577 gaaatttgtaagtggcaccattaattgggccata 55419610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 482
Target Start/End: Original strand, 55419720 - 55419831
Alignment:
Q  371 acttgagcttgggggtttccaatgattgcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagattc 470  Q
    |||||| |||| | |||||||| |||||||||||| || ||||||| | |    || |||||||||  ||| ||||||||| |||||||| |||||||||    
T  55419720 acttgaacttgagtgtttccaaggattgcttatgcgtcgttgctcacaccaattcttttttggatatctggcttatgaaggtttatggaaataaagattc 55419819  T
Q  471 ttggactaaatt 482  Q
    ||||||||||||    
T  55419820 ttggactaaatt 55419831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 489
Target Start/End: Complemental strand, 20019817 - 20019767
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaattattcact 489  Q
    ||||| |||||||| ||||||||| |||| |||||||||||||| ||||||    
T  20019817 tgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20019767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 20016224 - 20016180
Alignment:
Q  445 atgaaggattatggaattaaagattcttggactaaattattcact 489  Q
    |||||||| ||||||||| |||| |||||||||||||| ||||||    
T  20016224 atgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 267
Target Start/End: Original strand, 3926763 - 3926887
Alignment:
Q  143 aagttagggttcatactttaggtactaatttttggaaaaggatcccagacttcccttctgaaatcatggatgtagccgattggtgtcatgggatattttt 242  Q
    ||||||||||||||||| ||||||| ||||||||||  ||||| ||| ||||||||||  | ||||||| | || || || ||| |  ||||| |||| |    
T  3926763 aagttagggttcatactctaggtaccaatttttggaggaggattccaaacttcccttcaaatatcatgggtttacccaatgggtatgttgggaaatttgt 3926862  T
Q  243 aagtggcaccattaattgggccata 267  Q
    ||||||||| |||||||||||||||    
T  3926863 aagtggcacaattaattgggccata 3926887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 3927065 - 3927108
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaatt 482  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  3927065 tgggttatgaaggattatggaaataaaaattcttggactaaatt 3927108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 3926908 - 3926960
Alignment:
Q  291 ttcatggattattctctctcttgatttagaaaaagagtcttatcaagagattt 343  Q
    ||||||| | ||||| ||||||||||||| ||| ||||| |||||||||||||    
T  3926908 ttcatgggtcattctttctcttgatttaggaaacgagtcctatcaagagattt 3926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 489
Target Start/End: Original strand, 2442049 - 2442095
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattattcact 489  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  2442049 ttatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 9608389 - 9608344
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaattat 484  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||    
T  9608389 tgggttatgaaggaatatggaaatatagattcttggactaaattat 9608344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 2456255 - 2456298
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaatt 482  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  2456255 tgggttatgaaggaatatggaaataaagactcttggactaaatt 2456298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 3754606 - 3754649
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaatt 482  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  3754606 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 3754649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 494
Target Start/End: Complemental strand, 4142175 - 4142124
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattattcactgttcc 494  Q
    |||||||||| ||||||| |||||| |||||||||||||| |||||| ||||    
T  4142175 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 4142124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 489
Target Start/End: Original strand, 968677 - 968727
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaattattcact 489  Q
    ||||||||||||||  |||||| |||||| || ||||||||||||||||||    
T  968677 tgggttatgaaggaacatggaaataaagagtcatggactaaattattcact 968727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 489
Target Start/End: Complemental strand, 4157985 - 4157939
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattattcact 489  Q
    |||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  4157985 ttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 997582 - 997631
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaattattcac 488  Q
    ||||| |||||||| ||||||| |||||| |||||||||||| |||||||    
T  997582 tgggtaatgaaggaatatggaaataaagagtcttggactaaactattcac 997631  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 1013972 - 1014021
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaattattcac 488  Q
    ||||| |||||||| ||||||| |||||| |||||||||||| |||||||    
T  1013972 tgggtaatgaaggaatatggaaataaagagtcttggactaaactattcac 1014021  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 484
Target Start/End: Original strand, 13498234 - 13498275
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattat 484  Q
    |||||||||| ||||||| |||||| ||||||||||||||||    
T  13498234 ttatgaaggaatatggaaataaagagtcttggactaaattat 13498275  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 480
Target Start/End: Original strand, 44001605 - 44001642
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaa 480  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  44001605 ttatgaaggaatatggaattaaagagtcttggactaaa 44001642  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 803263 - 803211
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaattattcactgt 491  Q
    ||||||||||| || ||||||| |||||| ||||||||||| || ||||||||    
T  803263 tgggttatgaaagaatatggaaataaagagtcttggactaagttgttcactgt 803211  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 484
Target Start/End: Original strand, 20293005 - 20293046
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattat 484  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20293005 ttatgaaggaatatggaattaaagagtcttggactaaattat 20293046  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 484
Target Start/End: Original strand, 20305866 - 20305907
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattat 484  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20305866 ttatgaaggaatatggaattaaagagtcttggactaaattat 20305907  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 484
Target Start/End: Original strand, 20310270 - 20310311
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattat 484  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20310270 ttatgaaggaatatggaattaaagagtcttggactaaattat 20310311  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 11081819 - 11081862
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaatt 482  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  11081819 tgggttatgaaggagtatggaaataaagagtcttggactaaatt 11081862  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 484
Target Start/End: Original strand, 20301453 - 20301494
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattat 484  Q
    |||||||||| |||| ||||||||| ||||||||||||||||    
T  20301453 ttatgaaggaatatgcaattaaagagtcttggactaaattat 20301494  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 443 - 492
Target Start/End: Original strand, 6538844 - 6538893
Alignment:
Q  443 ttatgaaggattatggaattaaagattcttggactaaattattcactgtt 492  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtt 6538893  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 492
Target Start/End: Original strand, 20538018 - 20538077
Alignment:
Q  433 gatacatgggttatgaaggattatggaattaaagattcttggactaaattattcactgtt 492  Q
    |||| |||||| ||||| || ||||||||| |||| |||||||||||||| |||||||||    
T  20538018 gatatatgggtcatgaatgaatatggaatttaagaatcttggactaaattgttcactgtt 20538077  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 482
Target Start/End: Original strand, 89149 - 89192
Alignment:
Q  439 tgggttatgaaggattatggaattaaagattcttggactaaatt 482  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  89149 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 89192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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