View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0729_low_7 (Length: 386)

Name: NF0729_low_7
Description: NF0729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0729_low_7
NF0729_low_7
[»] chr5 (3 HSPs)
chr5 (17-108)||(589825-589916)
chr5 (108-205)||(40270927-40271024)
chr5 (244-292)||(40271063-40271111)
[»] chr1 (10 HSPs)
chr1 (107-205)||(10310640-10310738)
chr1 (107-201)||(30717982-30718076)
chr1 (244-292)||(10310778-10310826)
chr1 (245-292)||(30718120-30718167)
chr1 (335-380)||(9156831-9156876)
chr1 (332-380)||(9219607-9219655)
chr1 (323-373)||(9162649-9162699)
chr1 (335-377)||(9201132-9201174)
chr1 (335-373)||(9171446-9171484)
chr1 (335-373)||(9179428-9179466)
[»] chr3 (2 HSPs)
chr3 (109-205)||(5373735-5373830)
chr3 (244-292)||(5373869-5373917)
[»] chr7 (2 HSPs)
chr7 (109-205)||(27455903-27456000)
chr7 (245-293)||(27456041-27456089)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 589916 - 589825
Alignment:
Q  17 ttatgcttttaaaaatgaaatgttatattatatttctagatccgtcgcaggagacataatttcaaagaattttacatatctgaattacttaa 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  589916 ttatgcttttaaaaacgaaatgttatattatatttctagatccgtcgcaggagacataatttcaaagaattttacatatctgaattacttaa 589825  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 40270927 - 40271024
Alignment:
Q  108 aggaaaatgctgtattcagcgaaaaattttttaagaaaaattcaagaaccgctatttcttttattatgctaacccacatgtttggtaagtgggacctc 205  Q
    ||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40270927 aggaaaatgttgtattcagcgaaattttttttaacaaaaattcaagaaccgctatttcttttattatgctaacccacatgtttggtaagtgggacctc 40271024  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 40271063 - 40271111
Alignment:
Q  244 gattcttgaggaattcgtgagaaatctctcgcgttatatagcattgctg 292  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40271063 gattcttgaggaattcgtgagaaatctttcgcgttatatagcattgctg 40271111  T

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Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 10310640 - 10310738
Alignment:
Q  107 aaggaaaatgctgtattcagcgaaaaattttttaagaaaaattcaagaaccgctatttcttttattatgctaacccacatgtttggtaagtgggacctc 205  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10310640 aaggaaaatgctgtattcagcgaatttttttttaagaaaaattcaagaaccgctatttcttttattatgctaacccacatgtttggtaagtgggacctc 10310738  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 107 - 201
Target Start/End: Original strand, 30717982 - 30718076
Alignment:
Q  107 aaggaaaatgctgtattcagcgaaaaattttttaagaaaaattcaagaaccgctatttcttttattatgctaacccacatgtttggtaagtggga 201  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30717982 aaggaaaatgctgtattcagcgaaattttttttaagaaaaattcaagaaccgctatttcttttattatgctaacccacatgtttggtaagtggga 30718076  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 10310778 - 10310826
Alignment:
Q  244 gattcttgaggaattcgtgagaaatctctcgcgttatatagcattgctg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10310778 gattcttgaggaattcgtgagaaatctctcgcgttatatagcattgctg 10310826  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 30718120 - 30718167
Alignment:
Q  245 attcttgaggaattcgtgagaaatctctcgcgttatatagcattgctg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30718120 attcttgaggaattcgtgagaaatctctcgcgttatatagcattgctg 30718167  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 335 - 380
Target Start/End: Complemental strand, 9156876 - 9156831
Alignment:
Q  335 gaatgtttttgtcctgatggacactctggaaatggaacattggaag 380  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  9156876 gaatgtttctgtcctgatggacactctggaaatggaacattggaag 9156831  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 9219655 - 9219607
Alignment:
Q  332 tacgaatgtttttgtcctgatggacactctggaaatggaacattggaag 380  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  9219655 tacgaatgtttttgtcctaatggacaatctggaaatggaacattggaag 9219607  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 9162699 - 9162649
Alignment:
Q  323 gatggatcatacgaatgtttttgtcctgatggacactctggaaatggaaca 373  Q
    ||||||| ||| |||||||| |||||||||||||| |||||||||||||||    
T  9162699 gatggattatatgaatgtttctgtcctgatggacaatctggaaatggaaca 9162649  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 9201174 - 9201132
Alignment:
Q  335 gaatgtttttgtcctgatggacactctggaaatggaacattgg 377  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  9201174 gaatgtttttgtcctgatggacaatctggaaatggaacgttgg 9201132  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 9171484 - 9171446
Alignment:
Q  335 gaatgtttttgtcctgatggacactctggaaatggaaca 373  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  9171484 gaatgtttctgtcctgatggacaatctggaaatggaaca 9171446  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 9179466 - 9179428
Alignment:
Q  335 gaatgtttttgtcctgatggacactctggaaatggaaca 373  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  9179466 gaatgtttctgtcctgatggacaatctggaaatggaaca 9179428  T

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Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 5373735 - 5373830
Alignment:
Q  109 ggaaaatgctgtattcagcgaaaaattttttaagaaaaattcaagaaccgctatttcttttattatgctaacccacatgtttggtaagtgggacctc 205  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5373735 ggaaaatgctgtattcagcgaaaa-tattttaagaaaaattaaagaaccgctatttcttttattatgctaacccacatgtttggtaagtgggacctc 5373830  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 5373869 - 5373917
Alignment:
Q  244 gattcttgaggaattcgtgagaaatctctcgcgttatatagcattgctg 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5373869 gattcttgaggaattcgtgagaaatttctcgcgttatatagcattgctg 5373917  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 27455903 - 27456000
Alignment:
Q  109 ggaaaatgctgtattcagcgaaaaattt-tttaagaaaaattcaagaaccgctatttcttttattatgctaacccacatgtttggtaagtgggacctc 205  Q
    ||||||||||||||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27455903 ggaaaatgctgtattcagcaaaaaaaaaatttaagaaaaattcaagaaccgctatttcttttattatgctaacccatatgtttggtaagtgggacctc 27456000  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 27456041 - 27456089
Alignment:
Q  245 attcttgaggaattcgtgagaaatctctcgcgttatatagcattgctga 293  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27456041 attcttgaggaattcgtgagaaatctctcgcgttatatagcattcctga 27456089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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