View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0730_high_13 (Length: 336)
Name: NF0730_high_13
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0730_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 43700659 - 43700960
Alignment:
| Q |
10 |
gcagagaataaagaataatgactggacctgttgggtgagtgggctggctaaagtatatttgaaaggcttagatcaaagattaaggaacaattgagggtga |
109 |
Q |
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| T |
43700659 |
gcagagaataaagaataatgactggacctgttgggtgagtgggctggctaaagtatatttgaaaggcttagatcaaagattaaggaacaattgagggtga |
43700758 |
T |
|
| Q |
110 |
tgtgaaatctttgtgaggtgactatattagaataatatatgcatgcatggtccatttgggaatttatataagttgttaccacctaaaaaataattacctg |
209 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43700759 |
tgtgaaatctttgtgaggtgactatattagaata--atatgcatgcatggtccatttgggaatttatataagttgttaccacctaaaaaataattacctg |
43700856 |
T |
|
| Q |
210 |
atagttgg--nnnnnnnnnnnnnnnnnctatcattaaagtgatgtgaatgactattttactcttgaggtttgaattttgactcttgaaaatagcaatagc |
307 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43700857 |
atagttggtttttttattgatttttttttatcattaaagtgatgtgaatgactattttactcttgatgtttgaattttgactcttgaaaatagcaatagc |
43700956 |
T |
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| Q |
308 |
tgat |
311 |
Q |
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|||| |
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| T |
43700957 |
tgat |
43700960 |
T |
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