View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0730_high_7 (Length: 446)

Name: NF0730_high_7
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0730_high_7
NF0730_high_7
[»] chr4 (2 HSPs)
chr4 (1-339)||(42392028-42392371)
chr4 (67-100)||(4010590-4010623)
[»] chr3 (8 HSPs)
chr3 (390-446)||(6234123-6234179)
chr3 (390-446)||(13283025-13283081)
chr3 (391-446)||(6164334-6164389)
chr3 (391-446)||(6139017-6139074)
chr3 (396-446)||(6241909-6241959)
chr3 (398-446)||(6255137-6255185)
chr3 (396-436)||(6859282-6859322)
chr3 (396-436)||(7746936-7746976)
[»] scaffold0232 (1 HSPs)
scaffold0232 (73-102)||(21423-21452)
[»] chr1 (1 HSPs)
chr1 (59-100)||(7528122-7528163)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 42392371 - 42392028
Alignment:
Q  1 gggaaagaggttcatacca-ggtgttgagtgacctaatggatatacttcttgttaagttgttataactaggagtgtgcatggttcataaaccaaaccaaa 99  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42392371 gggaaagaggttcataccaaggtgttgagtgacgtaatggttatacttcttgttaagttgttataactaggagtgtgcatggttcataaatcaaaccaaa 42392272  T
Q  100 ccatatccaatttatggtttggtttcttaaactgtttcagaaaaaaccaa-nnnnnnnacgaaacagttcaggtttgctttgggtccggttcagaaccgg 198  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||        |||||| |||||| ||||| ||||||||||||||||||| ||    
T  42392271 ccatattcaatttatggtttggtttcttaacctgtttcagaaaaaaccaattttttttacgaaatagttcaagtttgttttgggtccggttcagaactgg 42392172  T
Q  199 tttgtgtt---nnnnnnngcggtttatttattttaccagtttctcaaacagtttccatggcttcccttcttagcttcttgaagtttatcttgccttttct 295  Q
    ||||  ||          |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  42392171 tttgcattaaaaaaaaaagcggtttattcattttaccagtttctcaaacagttttcatggcttcccttcttagcttcttgaagtttatcttgccttgtct 42392072  T
Q  296 aaggttgttttaaggatgttagttctaggtcattttgatgatgt 339  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  42392071 aaggtagttttaaggatgttagttctaggtcattttgatgatgt 42392028  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 4010623 - 4010590
Alignment:
Q  67 taggagtgtgcatggttcataaaccaaaccaaac 100  Q
    |||| |||||||||||||||||||||||||||||    
T  4010623 taggggtgtgcatggttcataaaccaaaccaaac 4010590  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 6234179 - 6234123
Alignment:
Q  390 aaaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatc 446  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6234179 aaaacaactcaagatatatgcattgatcatatatctctcgagacactttacgaaatc 6234123  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 13283025 - 13283081
Alignment:
Q  390 aaaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatc 446  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13283025 aaaacaactcaagatatatgcattgatcatatctctctcgagccactttacgaaatc 13283081  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 6164389 - 6164334
Alignment:
Q  391 aaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatc 446  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  6164389 aaacaactcaagatatatgcattgatcatatctctcttgagccacattacgaaatc 6164334  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 446
Target Start/End: Complemental strand, 6139074 - 6139017
Alignment:
Q  391 aaacaactcaagatatatgcattgatcata--tatctctcgagccactttacgaaatc 446  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  6139074 aaacaactcaagatatatgcattgatcatatctctctctcgagccactttacgaaatc 6139017  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 6241959 - 6241909
Alignment:
Q  396 actcaagatatatgcattgatcatatatctctcgagccactttacgaaatc 446  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  6241959 actcaagatatatgcattgatcatatctctctcgagccactttacggaatc 6241909  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 446
Target Start/End: Complemental strand, 6255185 - 6255137
Alignment:
Q  398 tcaagatatatgcattgatcatatatctctcgagccactttacgaaatc 446  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  6255185 tcaagatataagcattgatcatatctctctcgagtcactttacgaaatc 6255137  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 6859282 - 6859322
Alignment:
Q  396 actcaagatatatgcattgatcatatatctctcgagccact 436  Q
    |||||||||||||||||||||||| | |||||| |||||||    
T  6859282 actcaagatatatgcattgatcatgtctctctctagccact 6859322  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 7746976 - 7746936
Alignment:
Q  396 actcaagatatatgcattgatcatatatctctcgagccact 436  Q
    ||||||| |||||| ||||||||||| ||||||||||||||    
T  7746976 actcaaggtatatgtattgatcatatctctctcgagccact 7746936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 21423 - 21452
Alignment:
Q  73 tgtgcatggttcataaaccaaaccaaacca 102  Q
    ||||||||||||||||||||||||||||||    
T  21423 tgtgcatggttcataaaccaaaccaaacca 21452  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 7528122 - 7528163
Alignment:
Q  59 gttataactaggagtgtgcatggttcataaaccaaaccaaac 100  Q
    |||||||||||| ||||||||| ||||| |||||||||||||    
T  7528122 gttataactaggggtgtgcatgattcatgaaccaaaccaaac 7528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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