View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0730_low_10 (Length: 447)
Name: NF0730_low_10
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0730_low_10 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 42392353 - 42392677
Alignment:
| Q |
7 |
tggtatgaacctctttcccgcaacactactaacaatacacatggccatttcaaatgagtaatatttatgaattttaaaaggtaaatatgtgcttaaattt |
106 |
Q |
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| T |
42392353 |
tggtatgaacctctttcccgcaacactgctaacaatacacatggccatttcaaatgagtaatatttatgaattttaaaaggtaaatatgtgcttaaattt |
42392452 |
T |
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| Q |
107 |
taagactgaagaatacaccgtatgtatcaaaaagaagcatgttaacatgaaaagtaccagttataattggctcatcttcaaacttttcagacaaatgaaa |
206 |
Q |
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| T |
42392453 |
taagacagaagaatacactgtatgtatcgaaaagaagcatgtcaacatgaaaagtaccagttataattggctcatcttcaaacttttcagacaaatgaaa |
42392552 |
T |
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| Q |
207 |
acaaatttctcttccatttttatttagtgtagctaaataaattatttagactaaacttcaagtagcacacatctaaatacaagtattcattctgatttta |
306 |
Q |
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| T |
42392553 |
acaaatttctcttccatttttatttagtgtagctaaataaattattgagactaaacttcaagtagcccacatctaaatacaagtattcattttgatttta |
42392652 |
T |
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| Q |
307 |
tatgttgatgtaataatgtttttgc |
331 |
Q |
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| T |
42392653 |
tatgttgatgtaataatgtttttgc |
42392677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 166 - 329
Target Start/End: Original strand, 42386634 - 42386808
Alignment:
| Q |
166 |
gttataattggctcatcttcaaacttttcagacaaatgaaaacaaatttctcttccattttt---attt-------agtgtagctaaataaattattt-a |
254 |
Q |
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| T |
42386634 |
gttatatttggttcatcttcaaattttttcgacaaatgaaaacaaaattctcttccatttttcttattttttatacagtgtagctaaataaattatttaa |
42386733 |
T |
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| Q |
255 |
gactaaacttcaagtagcacacatctaaatacaagtattcattctgattttatatgttgatgtaataatgttttt |
329 |
Q |
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| T |
42386734 |
gactaaacctaaagtaaaccacatcttaatgtaagttttcattccgattttatttgctaatgtaataatgttttt |
42386808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 6234179 - 6234123
Alignment:
| Q |
391 |
aaaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatc |
447 |
Q |
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| T |
6234179 |
aaaacaactcaagatatatgcattgatcatatatctctcgagacactttacgaaatc |
6234123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 391 - 447
Target Start/End: Original strand, 13283025 - 13283081
Alignment:
| Q |
391 |
aaaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatc |
447 |
Q |
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| T |
13283025 |
aaaacaactcaagatatatgcattgatcatatctctctcgagccactttacgaaatc |
13283081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 392 - 447
Target Start/End: Complemental strand, 6164389 - 6164334
Alignment:
| Q |
392 |
aaacaactcaagatatatgcattgatcatatatctctcgagccactttacgaaatc |
447 |
Q |
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| T |
6164389 |
aaacaactcaagatatatgcattgatcatatctctcttgagccacattacgaaatc |
6164334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 447
Target Start/End: Complemental strand, 6139074 - 6139017
Alignment:
| Q |
392 |
aaacaactcaagatatatgcattgatcata--tatctctcgagccactttacgaaatc |
447 |
Q |
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| T |
6139074 |
aaacaactcaagatatatgcattgatcatatctctctctcgagccactttacgaaatc |
6139017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 447
Target Start/End: Complemental strand, 6241959 - 6241909
Alignment:
| Q |
397 |
actcaagatatatgcattgatcatatatctctcgagccactttacgaaatc |
447 |
Q |
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| T |
6241959 |
actcaagatatatgcattgatcatatctctctcgagccactttacggaatc |
6241909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 6255185 - 6255137
Alignment:
| Q |
399 |
tcaagatatatgcattgatcatatatctctcgagccactttacgaaatc |
447 |
Q |
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| T |
6255185 |
tcaagatataagcattgatcatatctctctcgagtcactttacgaaatc |
6255137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 437
Target Start/End: Original strand, 6859282 - 6859322
Alignment:
| Q |
397 |
actcaagatatatgcattgatcatatatctctcgagccact |
437 |
Q |
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| T |
6859282 |
actcaagatatatgcattgatcatgtctctctctagccact |
6859322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 7746976 - 7746936
Alignment:
| Q |
397 |
actcaagatatatgcattgatcatatatctctcgagccact |
437 |
Q |
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| T |
7746976 |
actcaaggtatatgtattgatcatatctctctcgagccact |
7746936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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