View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0730_low_14 (Length: 365)

Name: NF0730_low_14
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0730_low_14
NF0730_low_14
[»] chr7 (11 HSPs)
chr7 (192-352)||(36193747-36193907)
chr7 (192-344)||(28628021-28628174)
chr7 (255-343)||(38135302-38135391)
chr7 (257-344)||(32368425-32368513)
chr7 (255-352)||(30144879-30144977)
chr7 (261-352)||(29653626-29653718)
chr7 (255-344)||(24549776-24549866)
chr7 (260-341)||(40830311-40830393)
chr7 (284-352)||(12966149-12966218)
chr7 (255-323)||(30814780-30814849)
chr7 (284-344)||(42187575-42187635)
[»] chr6 (8 HSPs)
chr6 (201-352)||(5053577-5053728)
chr6 (285-352)||(1748025-1748092)
chr6 (203-297)||(21870201-21870295)
chr6 (192-344)||(9593796-9593947)
chr6 (43-101)||(12414061-12414119)
chr6 (255-352)||(33997624-33997722)
chr6 (256-297)||(9749360-9749401)
chr6 (255-343)||(10617323-10617412)
[»] chr2 (11 HSPs)
chr2 (34-184)||(8567221-8567370)
chr2 (55-184)||(6519812-6519940)
chr2 (192-352)||(26784420-26784581)
chr2 (260-352)||(18188861-18188954)
chr2 (209-352)||(19235064-19235208)
chr2 (226-341)||(38860253-38860369)
chr2 (199-345)||(43832146-43832293)
chr2 (198-344)||(38434999-38435146)
chr2 (192-312)||(42543276-42543397)
chr2 (199-343)||(43752036-43752181)
chr2 (255-346)||(29548723-29548815)
[»] chr1 (18 HSPs)
chr1 (55-179)||(27441075-27441199)
chr1 (224-352)||(42501181-42501310)
chr1 (257-352)||(6025711-6025807)
chr1 (255-346)||(38868986-38869078)
chr1 (255-312)||(17815583-17815641)
chr1 (259-352)||(30834057-30834151)
chr1 (283-343)||(19969301-19969362)
chr1 (212-297)||(33560994-33561079)
chr1 (261-347)||(853870-853957)
chr1 (198-352)||(3818936-3819091)
chr1 (261-346)||(6299479-6299565)
chr1 (282-343)||(8203223-8203285)
chr1 (43-97)||(14791174-14791228)
chr1 (258-347)||(44008686-44008776)
chr1 (284-352)||(8342961-8343030)
chr1 (260-352)||(43423828-43423921)
chr1 (299-343)||(8676954-8676998)
chr1 (198-246)||(40419686-40419734)
[»] chr4 (10 HSPs)
chr4 (89-191)||(43345207-43345309)
chr4 (198-352)||(47372698-47372853)
chr4 (198-352)||(54470254-54470409)
chr4 (219-346)||(47147441-47147569)
chr4 (255-322)||(38903828-38903895)
chr4 (192-312)||(13805385-13805506)
chr4 (255-352)||(25755421-25755518)
chr4 (257-352)||(40018269-40018365)
chr4 (255-346)||(42293351-42293443)
chr4 (267-346)||(45569095-45569175)
[»] chr3 (12 HSPs)
chr3 (55-139)||(8552148-8552232)
chr3 (192-352)||(21200589-21200750)
chr3 (260-346)||(40982005-40982092)
chr3 (192-323)||(11581485-11581617)
chr3 (255-352)||(55244381-55244480)
chr3 (261-343)||(40116557-40116640)
chr3 (257-344)||(49841724-49841810)
chr3 (259-312)||(31261062-31261116)
chr3 (284-344)||(19162675-19162736)
chr3 (284-344)||(39600769-39600830)
chr3 (212-297)||(42510152-42510237)
chr3 (294-346)||(46431765-46431817)
[»] chr8 (13 HSPs)
chr8 (198-352)||(10079987-10080142)
chr8 (214-346)||(38178346-38178479)
chr8 (270-352)||(36069722-36069804)
chr8 (255-352)||(23492139-23492236)
chr8 (192-297)||(29700317-29700422)
chr8 (256-346)||(24739934-24740025)
chr8 (255-352)||(79131-79229)
chr8 (284-349)||(23023358-23023424)
chr8 (192-352)||(16917225-16917385)
chr8 (198-312)||(45512615-45512730)
chr8 (257-323)||(3079713-3079779)
chr8 (255-344)||(35643694-35643784)
chr8 (258-345)||(4011190-4011278)
[»] chr5 (10 HSPs)
chr5 (192-343)||(2712985-2713137)
chr5 (192-343)||(42199327-42199479)
chr5 (198-352)||(14749354-14749509)
chr5 (284-345)||(2066130-2066192)
chr5 (212-344)||(43475301-43475433)
chr5 (282-344)||(33157919-33157982)
chr5 (255-352)||(12576940-12577038)
chr5 (284-349)||(27998574-27998640)
chr5 (260-297)||(3775203-3775240)
chr5 (301-346)||(28186861-28186906)
[»] scaffold0325 (1 HSPs)
scaffold0325 (255-339)||(11901-11986)
[»] scaffold0050 (1 HSPs)
scaffold0050 (282-340)||(45536-45594)
[»] scaffold0015 (1 HSPs)
scaffold0015 (268-349)||(66654-66736)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 192 - 352
Target Start/End: Complemental strand, 36193907 - 36193747
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    |||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||    
T  36193907 taggttgtttcggcatataaagagaggacccgtggattatgtaggaaggagagtacttaacacggaggttagtcaaatcactagaggcaaaaaaacacct 36193808  T
Q  292 agaaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||    
T  36193807 agaaaattataagagagactattaacaaagattcagagattaatgagttggacaggaatat 36193747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 28628174 - 28628021
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| |||||||||| ||||||||| |||| | |||||||||| ||||||||||  |   | ||||| |||||||||||  ||||| | | ||||||||    
T  28628174 taggtggtttgggcatgtaaagagaaaacctgtagattatgtagtaaggagagtagatccgatggaggatagtcaaatcacaagaggtagaggaagacct 28628075  T
Q  292 agaaaat-tataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    ||||||  |||||||||||||| ||  ||||||| ||| |||||||||||||||    
T  28628074 agaaaaactataagagaaactattaggaaagatttagagattaatgagttggat 28628021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 38135391 - 38135302
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
    ||||| |||||| ||||||||||||| | ||||||||||||||  |||||||||||||| ||| ||||||| ||| ||||||||||||||    
T  38135391 ggaggatagtcagatcattagaggcagatgaagacctagaaaaagtataagagaaactattaaaaaagatttagagattaatgagttgga 38135302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 32368513 - 32368425
Alignment:
Q  257 agggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    ||||||||||||||| |||||||||| ||||| ||||||||| |||||||||| ||| |||  |||||| ||| |||| ||||||||||    
T  32368513 agggtagtcaaatcactagaggcaaaggaagatctagaaaatctataagagaagctattaaggaagatttagagattagtgagttggat 32368425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 30144879 - 30144977
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||| ||||||||| ||||| ||||| |||||||| ||||  |||  ||||||||| ||| ||||||  ||| |||||||||||||||||| ||||    
T  30144879 ggagggtggtcaaatcactagagacaaaataagacctataaaaactattcgagaaactattaagaaagatctagagattaatgagttggatagggatat 30144977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 352
Target Start/End: Complemental strand, 29653718 - 29653626
Alignment:
Q  261 tagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||||||||| |||||| || ||||||||| ||||||  | |||||||||||| ||| ||||||  ||| ||||||||||| ||||| |||||    
T  29653718 tagtcaaatcgttagagacagaagaagaccaagaaaaactgtaagagaaactattaagaaagatctagagattaatgagttagatagaaatat 29653626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 24549866 - 24549776
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaa-aattataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    |||||| | |||||||| |||||| | ||||||||||  || || |||||||||||||| ||| ||||||  ||| |||||||||||||||    
T  24549866 ggaggggattcaaatcactagaggtagaagaagacctgaaagaactataagagaaactattaagaaagatctagagattaatgagttggat 24549776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 40830311 - 40830393
Alignment:
Q  260 gtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttg 341  Q
    ||||| |||||| ||||| || | ||||||||||||||| |||||||||||||| ||| || |||  ||| ||||||||||||    
T  40830311 gtagtgaaatcactagagacagaggaagacctagaaaatctataagagaaactattaagaaggatctagaaattaatgagttg 40830393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 12966149 - 12966218
Alignment:
Q  284 gaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||||||||  |||||||||||||| ||| ||| ||| ||| |||||||| |||||||| |||||    
T  12966149 gaagacctagaaaaactataagagaaactattaagaaatatttagagattaatgatttggatagaaatat 12966218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 30814849 - 30814780
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaa-attataagagaaactactaacaaagat 323  Q
    ||||| |||||| |||| |||||||| | ||||||||||||| | |||||||||||||| ||| ||||||    
T  30814849 ggaggatagtcagatcactagaggcagaggaagacctagaaacactataagagaaactattaagaaagat 30814780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 42187575 - 42187635
Alignment:
Q  284 gaagacctagaaaattataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    ||||||||| ||||||||||||||||||| ||  ||| ||| ||| |||||| ||||||||    
T  42187575 gaagacctaaaaaattataagagaaactattaggaaatatttagagattaattagttggat 42187635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 5053577 - 5053728
Alignment:
Q  201 tgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaatta 300  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||| |||    
T  5053577 tgggcatataaagagaagacccgtggattatgtaggaaggagagtagttaacacggagggtagtcaaatcactcgaggcaaaggaagacctagaaagtta 5053676  T
Q  301 taagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||||||||||  || |||||||||||| ||||||||||||| |||||||||    
T  5053677 taagagaaactgttaccaaagattcagagattaatgagttggttaggaatat 5053728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 1748092 - 1748025
Alignment:
Q  285 aagacctagaaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||| |||||||| ||| |||||||||||||| ||| ||| ||| ||||||||||||||||| |||||    
T  1748092 aagaactagaaaactattagagaaactactaagaaaaatttagagattaatgagttggatagaaatat 1748025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 21870295 - 21870201
Alignment:
Q  203 ggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaa 297  Q
    ||||| || ||||||||||| | |||| ||||| ||||||||||  ||| | |||| |||||||||||| || ||||| | ||||||||||||||    
T  21870295 ggcatttagagagaagacctgtagattttgtagtaaggagagtagataagatggagagtagtcaaatcactaaaggcagaggaagacctagaaaa 21870201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 9593947 - 9593796
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| |||||||||| || ||||||||| | | |||  ||||| ||| ||||||  | | | |||||  ||||||||||  ||||| | | ||||||||    
T  9593947 taggtggtttgggcatgtagagagaagacatgtagatgctgtagtaagaagagtagatcagatggaggagagtcaaatca--agaggtagaggaagacct 9593850  T
Q  292 agaaaa-ttataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    |||||| ||||||||||||||| ||  ||||| | ||| |||||||||||||||    
T  9593849 agaaaaattataagagaaactattaggaaagacttagagattaatgagttggat 9593796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 12414061 - 12414119
Alignment:
Q  43 tcaagaacaagacgccaagcaaaaattaacacttctagaggcaccgcttttagccacaa 101  Q
    |||||||  ||||||||||||||||| ||||||| |||||||| |||||| || |||||    
T  12414061 tcaagaaagagacgccaagcaaaaatcaacacttttagaggcatcgctttcagtcacaa 12414119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 33997722 - 33997624
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacc-tagaaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||||||||||||| || |||||||| | ||||||| | ||||| |||||||||||||| ||| |||     ||| ||||||||||||||||| |||||    
T  33997722 ggagggtagtcaaaacactagaggcagaggaagaccttggaaaactataagagaaactattaagaaaagcctagagattaatgagttggatagaaatat 33997624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 9749401 - 9749360
Alignment:
Q  256 gagggtagtcaaatcattagaggcaaaagaagacctagaaaa 297  Q
    ||||||||||||||||||||||||| | ||||| ||||||||    
T  9749401 gagggtagtcaaatcattagaggcagaggaagatctagaaaa 9749360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 10617412 - 10617323
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
    |||||| |||||||||| |||||| | ||||| ||||||||||  |||||||||||| | ||| || |||  ||| ||||||||||||||    
T  10617412 ggaggggagtcaaatcactagaggtagaagaaaacctagaaaaactataagagaaaccattaagaaggatctagagattaatgagttgga 10617323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 34 - 184
Target Start/End: Complemental strand, 8567370 - 8567221
Alignment:
Q  34 gaatccaattcaagaacaagacgccaagcaaaaattaacacttctagaggcaccgcttttagccacaaaaatccataattactattaggctgctgattac 133  Q
    ||||||| || ||||||| | |||||||||||||| ||||||| ||| ||||||||||| |||||||||||||  |||||||||||||| ||||||||||    
T  8567370 gaatccagtttaagaacagg-cgccaagcaaaaatcaacacttttaggggcaccgctttcagccacaaaaatctgtaattactattaggttgctgattac 8567272  T
Q  134 tatcaatatctatatctgtcagaaaatagtaagcagaactaacagtgtaac 184  Q
    ||||||| ||||  ||||| | |||||  ||||||||||||||||||||||    
T  8567271 tatcaatctctaagtctgttaaaaaatgataagcagaactaacagtgtaac 8567221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 6519940 - 6519812
Alignment:
Q  55 cgccaagcaaaaattaacacttctagaggcaccgcttttagccacaaaaatccataattactattaggctgctgattactatcaatatctatatctgtca 154  Q
    |||||||||||||| ||||||| ||| ||||||||||| |||||||||||||  ||||||||||||||||| |||||||||||||  ||||  ||||| |    
T  6519940 cgccaagcaaaaatcaacacttttaggggcaccgctttcagccacaaaaatctgtaattactattaggctgttgattactatcaaactctaagtctgtta 6519841  T
Q  155 gaaaatagtaagcagaactaacagtgtaac 184  Q
     |||||  ||||| ||||||||||||||||    
T  6519840 aaaaatgataagc-gaactaacagtgtaac 6519812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 192 - 352
Target Start/End: Complemental strand, 26784581 - 26784420
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||||||||| |||| || ||||||||  | |||||| ||||| |||||| |||  ||| | ||||||||||||||||| |||||||| |  |||||||    
T  26784581 taggttgtttgtgcatttagagagaagatatgtggattttgtagtaaggagggtagataagatggagggtagtcaaatcactagaggcagagaaagacct 26784482  T
Q  292 ag-aaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    || |||| |||||||||||||| ||| ||||||  ||| |||||||||||| |||| |||||    
T  26784481 agaaaaactataagagaaactattaagaaagatatagagattaatgagttgaatagaaatat 26784420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 18188861 - 18188954
Alignment:
Q  260 gtagtcaaatcattagaggcaaaagaagacctagaaaa-ttataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||||||||||| |||||||||| | |||| ||||||| ||||||||||||||| | | ||||||  ||| ||||||||| ||||||| |||||    
T  18188861 gtagtcaaatcactagaggcaaagggagacttagaaaaattataagagaaactattcagaaagatctagagattaatgagctggatagaaatat 18188954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 19235208 - 19235064
Alignment:
Q  209 taaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagaga 307  Q
    ||||||||||||||  ||||| ||||| || |||||||  | | | |||||| |||||||||| |||||  | | ||||||||||||||  |||||||||    
T  19235208 taaagagaagacctgcggattctgtagtaaagagagtagatcagatggaggggagtcaaatcactagagatagaggaagacctagaaaaactataagaga 19235109  T
Q  308 aactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||| | | ||||||  ||| |||||||| |||||||| |||||    
T  19235108 aactattgagaaagatctagagattaatgatttggatagaaatat 19235064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 38860253 - 38860369
Alignment:
Q  226 gattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagatt 324  Q
    |||||||||||||||||||||  | | | ||||||||||||||| | |||||||| | |||||| | | ||||| ||||||||||||| ||| ||||||     
T  38860253 gattatgtaggaaggagagtagatgagatggagggtagtcaaattactagaggcagacgaagacttggaaaaatgataagagaaactattaagaaagatc 38860352  T
Q  325 cagatattaatgagttg 341  Q
     ||| ||| ||||||||    
T  38860353 tagagattcatgagttg 38860369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 345
Target Start/End: Original strand, 43832146 - 43832293
Alignment:
Q  199 tttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctaga-aaa 297  Q
    ||||||||| || |||||| || | ||||||||||||  |||||||||  | | | |||| ||| |||||||| |||| ||| | ||||||||| | |||    
T  43832146 tttgggcatgtacagagaaaacatgtggattatgtagttaggagagtagatcagatggagagtaatcaaatcagtagacgcagaggaagacctaaacaaa 43832245  T
Q  298 ttataagagaaactactaacaaagattcagatattaatgagttggata 345  Q
     |||||||||||||| ||| || |||  ||| ||||||||||||||||    
T  43832246 ctataagagaaactattaagaaggatctagagattaatgagttggata 43832293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 344
Target Start/End: Original strand, 38434999 - 38435146
Alignment:
Q  198 gtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctag-aaa 296  Q
    |||||||||| |||||||||||| | | |||  | ||| ||||||||||  | | | ||||| |||||| |||| |||||||| | | |||||||| |||    
T  38434999 gtttgggcatgtaaagagaagacttgtagatgctttagtaaggagagtagatcatatggaggatagtcagatcactagaggcagaggtagacctagaaaa 38435098  T
Q  297 attataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    | || ||||||||||| ||| ||||||  ||| ||||||| |||||||    
T  38435099 actacaagagaaactattaagaaagatctagagattaatgtgttggat 38435146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 42543276 - 42543397
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| |||||||||| || ||||||||||| |||||| |||||  |||||||||  | | | |||||| ||||| |||| |||||| |   | ||||||    
T  42543276 taggtggtttgggcatgtacagagaagacctgtggattctgtagttaggagagtagatcaaatggaggggagtcagatcactagaggtaggggtagacct 42543375  T
Q  292 ag-aaaattataagagaaacta 312  Q
    || |||| ||||||||||||||    
T  42543376 agaaaaactataagagaaacta 42543397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 343
Target Start/End: Complemental strand, 43752181 - 43752036
Alignment:
Q  199 tttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctag-aaaa 297  Q
    ||||| ||| || ||||||||||| | |||||||||| | ||||||||  | | | ||||| || ||| |||| | |||||| | |||||||||| ||||    
T  43752181 tttggacatgtagagagaagacctatagattatgtagtagggagagtagatcagatggaggatactcagatcactggaggcataggaagacctagaaaaa 43752082  T
Q  298 ttataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
     ||| |||||||||| ||  |||||||  || ||||||||||||||    
T  43752081 ctatcagagaaactattaggaaagatttggaaattaatgagttgga 43752036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 29548815 - 29548723
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacct-agaaaattataagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    |||||||||||||||||  ||| ||| | |||||||| | |||| ||||||||||| || ||| ||||||| ||| ||||||| ||| |||||    
T  29548815 ggagggtagtcaaatcacgagaagcagaggaagacctgaaaaaactataagagaaattattaagaaagatttagagattaatgtgtttgatag 29548723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 27441199 - 27441075
Alignment:
Q  55 cgccaagcaaaaattaacacttctagaggcaccgcttttagccacaaaaatccataattactattaggctgctgattactatcaatatctatatctgtca 154  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||| ||||  |||||||||||||||||||||| ||||||||  ||||| ||||| |    
T  27441199 cgccaagcaaaaatcaacacttttagaggcaccgctttcagccacaataatctgtaattactattaggctgctgatgactatcaagctctatgtctgtta 27441100  T
Q  155 gaaaatagtaagcagaactaacagt 179  Q
     |||||| |||||||||||||||||    
T  27441099 aaaaataataagcagaactaacagt 27441075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 352
Target Start/End: Original strand, 42501181 - 42501310
Alignment:
Q  224 tggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaaga 322  Q
    |||||| ||||| |||||||||| || | | |||||||||||||||||||||||| | | ||| |||||| |||| ||||||||||| || ||| |||||    
T  42501181 tggattctgtagaaaggagagtagttcagatggagggtagtcaaatcattagaggtagaggaaaacctagaaaaactataagagaaattattaagaaaga 42501280  T
Q  323 ttcagatattaatgagttggataggaatat 352  Q
    |  | | ||||||||||||||||| |||||    
T  42501281 tctatagattaatgagttggatagaaatat 42501310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 352
Target Start/End: Original strand, 6025711 - 6025807
Alignment:
Q  257 agggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||||||||| |||||||| | |||||||||| |||| ||||||||| |||| ||| ||||||  ||| ||||||||||||||||| |||||    
T  6025711 agggtagtcaaatcactagaggcagaggaagacctagaaaaactataagagatactagtaaaaaagatctagagattaatgagttggatagaaatat 6025807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 38868986 - 38869078
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||| ||||||  ||  ||||||| |||||||||    
T  38868986 ggagggtagtcaaatcattagaggcagaagaagacctagaaaaactataagagaaattattaagaaagatctagcgattaatgggttggatag 38869078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 17815583 - 17815641
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaacta 312  Q
    |||| |||||||||||||| |||||||  |||||||||| |||||||||||||||||||    
T  17815583 ggagagtagtcaaatcattggaggcaagggaagacctagaaaaattataagagaaacta 17815641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 30834151 - 30834057
Alignment:
Q  259 ggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||||||  |||||| | | ||||||||||||||  |||||||||||||| ||  ||||||  ||| ||||||||||||||||| |||||    
T  30834151 ggtagtcaaatcgatagagggagaggaagacctagaaaagctataagagaaactattacgaaagatctagagattaatgagttggatagaaatat 30834057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 19969362 - 19969301
Alignment:
Q  283 agaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
    |||||||||||||||  |||||||||||||| ||||||||||  ||| ||||||||||||||    
T  19969362 agaagacctagaaaaactataagagaaactattaacaaagatctagagattaatgagttgga 19969301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 33561079 - 33560994
Alignment:
Q  212 agagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaa 297  Q
    ||||||||||| | |||| ||||| ||||||||||  ||  | ||||||||||||||||| |||||||| | |||| |||||||||    
T  33561079 agagaagacctgtagattctgtagtaaggagagtagatatgatggagggtagtcaaatcactagaggcagaggaagtcctagaaaa 33560994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 853957 - 853870
Alignment:
Q  261 tagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggatagg 347  Q
    ||||||||||| |||||||| | ||||||||| ||||| |||| ||||||||| ||| || |||  ||| |||| |||||||||||||    
T  853957 tagtcaaatcactagaggcagaggaagacctaaaaaatctatacgagaaactattaagaaggatctagagattagtgagttggatagg 853870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 352
Target Start/End: Complemental strand, 3819091 - 3818936
Alignment:
Q  198 gtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaa 297  Q
    |||||||||| || | ||||||| | |||||| | ||| || |||||||  | | | |||||||| ||||| || |||||  | | |||||||| |||||    
T  3819091 gtttgggcatgtagaaagaagacttgtggattctctagtaaagagagtagatcagatggagggtaatcaaaccactagagaaagaggaagaccttgaaaa 3818992  T
Q  298 t-tataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
      |||||||||||||| ||| ||||||| ||| |||||||||||| |||| |||||    
T  3818991 actataagagaaactattaagaaagatttagagattaatgagttgaatagaaatat 3818936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 6299565 - 6299479
Alignment:
Q  261 tagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    ||||||||||| ||||||||||||||  | ||| |||||||||||||||| |  ||| ||||||  ||| ||||||||||| |||||    
T  6299565 tagtcaaatcactagaggcaaaagaaagcttagaaaaattataagagaaattgttaagaaagatctagagattaatgagtttgatag 6299479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 8203285 - 8203223
Alignment:
Q  282 aagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||  ||| ||||||||||||||    
T  8203285 aagaagacctagaaaaactataagagaaactattaaaaaagatctagagattaatgagttgga 8203223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 14791174 - 14791228
Alignment:
Q  43 tcaagaacaagacgccaagcaaaaattaacacttctagaggcaccgcttttagcc 97  Q
    |||||||  ||||||||| ||||||| ||||||| ||||||||||||||| ||||    
T  14791174 tcaagaaagagacgccaaacaaaaatcaacacttttagaggcaccgctttcagcc 14791228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 347
Target Start/End: Original strand, 44008686 - 44008776
Alignment:
Q  258 gggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggatagg 347  Q
    |||||||||||||| |||||||| | |||||||||| |||| | ||||||||||||   | ||||||  ||| || |||||||||||||||    
T  44008686 gggtagtcaaatcactagaggcagaggaagacctagaaaaaatctaagagaaactatcgagaaagatctagagatcaatgagttggatagg 44008776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 8343030 - 8342961
Alignment:
Q  284 gaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||||||||  |||||||||||| | ||| ||||||  ||| ||||||||||||||||| |||||    
T  8343030 gaagacctagaaaaactataagagaaacaattaataaagatctagagattaatgagttggatagaaatat 8342961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 352
Target Start/End: Original strand, 43423828 - 43423921
Alignment:
Q  260 gtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||||||||||| |||||| | | |||||||||| ||||||| |||||| || | ||| ||||||  ||| |||| |||||||||||| |||||    
T  43423828 gtagtcaaatcactagaggtagaggaagacctagaaaaattacaagagagaccattaagaaagatctagagattagtgagttggatagaaatat 43423921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 8676998 - 8676954
Alignment:
Q  299 tataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
    |||||||||||||| ||| ||||||| ||| ||||||||||||||    
T  8676998 tataagagaaactattaaaaaagatttagagattaatgagttgga 8676954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 40419686 - 40419734
Alignment:
Q  198 gtttgggcatataaagagaagacctttggattatgtaggaaggagagta 246  Q
    |||||||||| || ||||||||| | |||||||||||| ||||||||||    
T  40419686 gtttgggcatgtagagagaagacatgtggattatgtagcaaggagagta 40419734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 43345309 - 43345207
Alignment:
Q  89 cttttagccacaaaaatccataattactattaggctgctgattactatcaatatctatatctgtcagaaaatagtaagcagaactaacagtgtaactgtt 188  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||  ||||| ||||| | |||||| |||||||||||||||||||||| |||    
T  43345309 cttttagtcacaaaaatccataattactattaggctgctgatgactatcaagctctatgtctgttaaaaaataataagcagaactaacagtgtaacggtt 43345210  T
Q  189 aga 191  Q
    |||    
T  43345209 aga 43345207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 47372698 - 47372853
Alignment:
Q  198 gtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct-agaaa 296  Q
    |||| ||||| || || |||||||  |||||| ||||||||| ||||||  | | ||||||||||||||||||| |||||||| | | |||| | |||||    
T  47372698 gtttaggcatgtagagcgaagacccgtggattttgtaggaagaagagtagattagacggagggtagtcaaatcactagaggcagaggtagacttgagaaa 47372797  T
Q  297 attataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    | |||||||||||||||||| |||||| |||| ||||||||||||||||| |||||    
T  47372798 actataagagaaactactaataaagatccagagattaatgagttggatagaaatat 47372853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 54470254 - 54470409
Alignment:
Q  198 gtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctag-aaa 296  Q
    |||||||||| || ||||||||| | |  ||||||||| ||||||||||  | | | |||| |||||||||| | |||||||||||||||||| || |||    
T  54470254 gtttgggcatgtagagagaagacatgtaaattatgtagtaaggagagtaaatcaaatggagagtagtcaaattactagaggcaaaagaagaccaagaaaa 54470353  T
Q  297 attataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    | |||||||||| ||| ||| |||| |  ||| ||||||||||||||||| |||||    
T  54470354 actataagagaatctattaataaagttctagagattaatgagttggatagaaatat 54470409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 47147441 - 47147569
Alignment:
Q  219 acctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaac 317  Q
    |||| |||||||||||| ||||||||||  | | | |||| ||||||  |||| |||||||| | ||||||||||||||  ||||  |||||||| |||     
T  47147441 acctgtggattatgtagtaaggagagtaaatcagatggagagtagtcggatcactagaggcagaggaagacctagaaaaactatagaagaaactattaag 47147540  T
Q  318 aaagattcagatattaatgagttggatag 346  Q
    ||||||  ||| |||||||||||||||||    
T  47147541 aaagatctagagattaatgagttggatag 47147569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 38903895 - 38903828
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaattataagagaaactactaacaaaga 322  Q
    |||||||||||||||   |||||||| | |||||||||||||| |||||||||||||| ||| |||||    
T  38903895 ggagggtagtcaaatggctagaggcagatgaagacctagaaaactataagagaaactattaagaaaga 38903828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 13805506 - 13805385
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| ||||||| || || ||||||||||||| |||| ||||| ||||||| ||  | ||| ||||| | |||| |||| |||||||| | ||| ||||    
T  13805506 taggtggtttgggtatgtagagagaagacctttagattttgtagcaaggagactagatcacatggaggattgtcagatcactagaggcagaggaaaacct 13805407  T
Q  292 ag-aaaattataagagaaacta 312  Q
    || |||| ||||||||||||||    
T  13805406 agaaaaactataagagaaacta 13805385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 25755421 - 25755518
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||||||  ||||||| ||||||||||| |||||| |||||||  ||||||||||||| |||  |||| |  |  |||||||||||||||||| ||||    
T  25755421 ggagggtgatcaaatcgttagaggcaaaggaagacgtagaaaaccataagagaaactattaagtaagacttggggattaatgagttggatagggatat 25755518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 352
Target Start/End: Complemental strand, 40018365 - 40018269
Alignment:
Q  257 agggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||||||||| ||||||||||  ||||| ||| |||| ||||||| |||||  ||| ||||||  ||| || ||||||||||||||| ||||    
T  40018365 agggtagtcaaatcactagaggcaaataaagacttagaaaaactataagaaaaactgttaagaaagatctagagatcaatgagttggatagggatat 40018269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 346
Target Start/End: Complemental strand, 42293443 - 42293351
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    |||| |||||||||||| |||||||||| || || ||| ||||  |||||||||||||| ||| ||||||  ||| ||||||||||| |||||    
T  42293443 ggagagtagtcaaatcactagaggcaaaggatgaactaaaaaaactataagagaaactattaagaaagatctagaaattaatgagttagatag 42293351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 45569175 - 45569095
Alignment:
Q  267 aatcattagaggcaaaagaagacctagaaa-attataagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    ||||| |||||||| | ||||||||||||| |||||||||||||||| ||| ||| ||  ||| || ||||||||||||||    
T  45569175 aatcactagaggcagaggaagacctagaaacattataagagaaactattaagaaaaatctagagatcaatgagttggatag 45569095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 8552232 - 8552148
Alignment:
Q  55 cgccaagcaaaaattaacacttctagaggcaccgcttttagccacaaaaatccataattactattaggctgctgattactatcaa 139  Q
    |||||||||||||| ||||||| ||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||    
T  8552232 cgccaagcaaaaatcaacacttttaggggcaccgctttcaaccacaaaaatccgtaattactattaggctgctgattactatcaa 8552148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 352
Target Start/End: Original strand, 21200589 - 21200750
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| |||||||||| || ||||||||| | | |||| || || ||||||||||  | ||| |||| |||||||||||| ||| || | | ||||||||    
T  21200589 taggtggtttgggcatgtagagagaagacatgtagattctgcagtaaggagagtagatcacatggagagtagtcaaatcactagggggagaggaagacct 21200688  T
Q  292 ag-aaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    || |||| ||| ||| |||||| | | ||||||  ||||||||||||||||||||| |||||    
T  21200689 agaaaaactattagacaaactatttagaaagatctagatattaatgagttggatagaaatat 21200750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 346
Target Start/End: Original strand, 40982005 - 40982092
Alignment:
Q  260 gtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    |||||||||||| ||||| |||| |||||||||| |||| |||||||| ||||| ||| ||||||  ||||||||||| |||||||||    
T  40982005 gtagtcaaatcactagagacaaaggaagacctagaaaaactataagagtaactattaagaaagatctagatattaatgtgttggatag 40982092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 323
Target Start/End: Original strand, 11581485 - 11581617
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| ||||||| || || ||||||||| | || ||||||||| ||| ||||||| | | | | |||  |||||||||| |||||| |  |||||||||    
T  11581485 taggtggtttgggtatgtagagagaagacatgtgaattatgtagtaagaagagtacatcagatgtaggtgagtcaaatcactagaggtatgagaagacct 11581584  T
Q  292 ag-aaaattataagagaaactactaacaaagat 323  Q
    || |||| |||||||||||||| ||| ||||||    
T  11581585 agaaaaactataagagaaactattaagaaagat 11581617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 55244381 - 55244480
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaa--ttataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||||||||||| ||||||| || ||||||||||||||  |  ||||||||| |  ||| ||| ||  ||| ||||||||||||||||| |||||    
T  55244381 ggagggtagtcaaatcactagaggccaaggaagacctagaaaaactcttaagagaaattcttaagaaaaatctagagattaatgagttggatagaaatat 55244480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 40116640 - 40116557
Alignment:
Q  261 tagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
    |||||| |||| ||||| |||| ||||||||||||||  |||||||||||||| ||  | ||||| ||| ||||||||||||||    
T  40116640 tagtcagatcactagagccaaaggaagacctagaaaaactataagagaaactattaggatagatttagagattaatgagttgga 40116557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 344
Target Start/End: Original strand, 49841724 - 49841810
Alignment:
Q  257 agggtagtcaaatcattagaggcaaaagaagacctagaaaattataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    ||||||||||||| | |||||| | | ||||||| ||||||  ||||||||||||| ||||||||||  | | |||||||||||||||    
T  49841724 agggtagtcaaattactagaggtagaggaagacc-agaaaaaaataagagaaactattaacaaagatctaaagattaatgagttggat 49841810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 31261116 - 31261062
Alignment:
Q  259 ggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaacta 312  Q
    ||||||||||||| |||||||| | |||||||||| |||| ||||||||||||||    
T  31261116 ggtagtcaaatcactagaggcagaggaagacctagaaaaactataagagaaacta 31261062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 19162736 - 19162675
Alignment:
Q  284 gaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    |||||||||| |||| |||||||||||||| ||  ||||||| ||| |||||||||||||||    
T  19162736 gaagacctaggaaatctataagagaaactattaggaaagatttagagattaatgagttggat 19162675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 344
Target Start/End: Complemental strand, 39600830 - 39600769
Alignment:
Q  284 gaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    ||||||||||||||  |||||||||||||| ||| ||||||| |||  ||||||||||||||    
T  39600830 gaagacctagaaaaactataagagaaactattaagaaagatttagaggttaatgagttggat 39600769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 42510237 - 42510152
Alignment:
Q  212 agagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaa 297  Q
    ||||||||||| | |||| ||| | ||||||||||  | | | ||||| |||||| |||| |||||||||| ||||||||||||||    
T  42510237 agagaagacctatagattttgtggtaaggagagtagatcagatggaggatagtcagatcactagaggcaaaggaagacctagaaaa 42510152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 46431817 - 46431765
Alignment:
Q  294 aaaattataagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    |||| |||||||||||||| ||| ||||||  ||| |||||||||||||||||    
T  46431817 aaaactataagagaaactattaaaaaagatctagagattaatgagttggatag 46431765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 352
Target Start/End: Complemental strand, 10080142 - 10079987
Alignment:
Q  198 gtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctaga-aa 296  Q
    |||||||||| || |||||||||||  ||||| ||||| ||||||||||  | | | | |||| |||||||||| |||||| | | ||||||||||| ||    
T  10080142 gtttgggcatgtagagagaagacctgaggattttgtagtaaggagagtagatcaaatgaaggggagtcaaatcactagaggtagaggaagacctagagaa 10080043  T
Q  297 attataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    | ||||||| |||||  ||| ||||||  ||| ||||||||||||||||| |||||    
T  10080042 actataagaaaaactgttaagaaagatctagagattaatgagttggatagaaatat 10079987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 346
Target Start/End: Complemental strand, 38178479 - 38178346
Alignment:
Q  214 agaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaacta 312  Q
    ||||||||| | |||| ||||| ||||||||||  | | | ||||| ||||||||||  |||||| | | ||||||||||||||  ||||||||||||||    
T  38178479 agaagacctgtagattttgtagtaaggagagtagatcagatggaggatagtcaaatcgctagaggtagaggaagacctagaaaaactataagagaaacta 38178380  T
Q  313 ctaacaaagattcagatattaatgagttggatag 346  Q
     |||||||||   ||| |||||||||||||||||    
T  38178379 ttaacaaagacctagacattaatgagttggatag 38178346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 36069722 - 36069804
Alignment:
Q  270 cattagaggcaaaagaagacctagaaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||| ||| |||||  |||||||||||||| ||||||| ||||||| ||| ||| ||||||||||||| ||| |||||    
T  36069722 cattagaggtaaaggaagatttagaaaattataagggaaactattaacaaatatttagagattaatgagttgggtagaaatat 36069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 23492139 - 23492236
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||||||||||| ||||   | | |||||||||||||| ||| |||||||||||| | ||||||  ||  ||||||||||||||||| |||||    
T  23492139 ggagggtagtcaaatcactagatatagaggaagacctagaaaactattagagaaactactcagaaagatgtagcgattaatgagttggatagaaatat 23492236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 29700317 - 29700422
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| ||||||||||||| ||| |||||| ||||||| ||||| ||||||||||  | | | ||||| |||||| |||| |||||| | | ||||||||    
T  29700317 taggtggtttgggcatatagagaaaagaccattggattctgtagtaaggagagtagattagatggaggatagtcatatcactagaggtagaggaagacct 29700416  T
Q  292 agaaaa 297  Q
    ||||||    
T  29700417 agaaaa 29700422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 346
Target Start/End: Complemental strand, 24740025 - 24739934
Alignment:
Q  256 gagggtagtcaaatcattagaggcaaaagaagacctagaaaa-ttataagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    ||||||||||||||||  ||||||| | || ||||||||||| ||||||||||||||| | | ||||||  ||| |||||| ||||||||||    
T  24740025 gagggtagtcaaatcaccagaggcacatgacgacctagaaaaattataagagaaactattgagaaagatgtagagattaatcagttggatag 24739934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 352
Target Start/End: Original strand, 79131 - 79229
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaa-attataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||||||||||||| |||| ||| | |||| | |||||| | |||||||||||||| ||| ||||||  ||| ||||||||| ||||||| |||||    
T  79131 ggagggtagtcaaatcactagaagcagaggaaggcttagaaacactataagagaaactattaagaaagatctagagattaatgagctggatagaaatat 79229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 23023358 - 23023424
Alignment:
Q  284 gaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggataggaa 349  Q
    ||||||||||||||  |||||||||||||||||| ||||||  | | ||||||||||||||||||||    
T  23023358 gaagacctagaaaaactataagagaaactactaagaaagatctacagattaatgagttggataggaa 23023424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 352
Target Start/End: Original strand, 16917225 - 16917385
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| |||||||||| |||||||||| | | | |||| ||||| ||||||||||  | | |  |||| ||||||||||| || ||| | ||||||||||    
T  16917225 taggtggtttgggcatgtaaagagaaggcttgtagatt-tgtagtaaggagagtagatcagattgaggatagtcaaatcactacaggtagaagaagacct 16917323  T
Q  292 agaaaa-ttataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    ||||||  |||| | |||||||  ||  |||||| ||| ||||||||||||||||| |||||    
T  16917324 agaaaagctataggtgaaactatcaaggaagatttagagattaatgagttggatagaaatat 16917385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 312
Target Start/End: Complemental strand, 45512730 - 45512615
Alignment:
Q  198 gtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctag-aaa 296  Q
    |||||||||||||||||||||| || | ||||  |||| ||| ||||||  | | | ||  | ||||||||||| |||||||| | |||||||||| |||    
T  45512730 gtttgggcatataaagagaagatctctagattcggtagtaagcagagtagattagatggcagatagtcaaatcactagaggcagaggaagacctagaaaa 45512631  T
Q  297 attataagagaaacta 312  Q
    | ||||||||||||||    
T  45512630 actataagagaaacta 45512615  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 3079779 - 3079713
Alignment:
Q  257 agggtagtcaaatcattagaggcaaaagaagacctagaaaattataagagaaactactaacaaagat 323  Q
    |||| ||| |||||| |||||| ||| ||||||||||| || |||||||||||||| ||| ||||||    
T  3079779 aggggagtgaaatcactagaggtaaaggaagacctagataactataagagaaactattaagaaagat 3079713  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 35643784 - 35643694
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    ||||| |||||| || | |||||||| | ||||||||||||||  ||||||||||| || ||| ||||||  ||| |||||||||||||||    
T  35643784 ggaggatagtcagattactagaggcagaggaagacctagaaaaactataagagaaattattaagaaagatctagagattaatgagttggat 35643694  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 345
Target Start/End: Original strand, 4011190 - 4011278
Alignment:
Q  258 gggtagtcaaatcattagaggcaaaagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggata 345  Q
    ||||||| |||||  ||||| || | ||||||||||||||  |||||||||||||| ||| ||||||  | | ||||||||||||||||    
T  4011190 gggtagttaaatcgctagagacagaggaagacctagaaaaactataagagaaactattaagaaagatctaaagattaatgagttggata 4011278  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 343
Target Start/End: Original strand, 2712985 - 2713137
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| |||||||||| || ||||||||||| |||||| |||| |||||||||||  | | | |||||  |||||||||| ||||| ||   ||||||||    
T  2712985 taggtggtttgggcatgtagagagaagacctgtggattctgtatgaaggagagtagatcagatggaggagagtcaaatcactagagtcaggggaagacct 2713084  T
Q  292 ag-aaaattataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
    || |||| |||||||||||||| ||| || |||  ||| || |||||||||||    
T  2713085 agaaaaactataagagaaactattaagaaggatctagagatgaatgagttgga 2713137  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 343
Target Start/End: Original strand, 42199327 - 42199479
Alignment:
Q  192 taggttgtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacct 291  Q
    ||||| |||||||||| || ||||||||| | | |||| ||||| ||||||||||  | ||| |||| |||||||||||| ||| || | |  |||||||    
T  42199327 taggtggtttgggcatgtagagagaagacatgtagattctgtagtaaggagagtagatcacatggagagtagtcaaatcactagggggagagaaagacct 42199426  T
Q  292 ag-aaaattataagagaaactactaacaaagattcagatattaatgagttgga 343  Q
    || |||| ||| ||| |||||| | | ||||||  ||||||||||||||||||    
T  42199427 agaaaaactattagacaaactatttagaaagatctagatattaatgagttgga 42199479  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 352
Target Start/End: Original strand, 14749354 - 14749509
Alignment:
Q  198 gtttgggcatataaagagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctag-aaa 296  Q
    |||||| ||| || ||||||||||| |||||| ||| | |||||||||   | | | |||||| |||||||||| || ||||| | |||||||||| |||    
T  14749354 gtttggacatgtagagagaagacctgtggattctgttgtaaggagagtcgatcagatggaggggagtcaaatcactaaaggcagaggaagacctagaaaa 14749453  T
Q  297 attataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    | ||||||||||||||  || || |||  ||| ||||| ||||||||||| |||||    
T  14749454 actataagagaaactatcaagaaggatctagagattaacgagttggatagaaatat 14749509  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 2066130 - 2066192
Alignment:
Q  284 gaagacctagaaaa-ttataagagaaactactaacaaagattcagatattaatgagttggata 345  Q
    |||||||||||||| |||||| |||||||||||| ||||||  ||| ||||||||||||||||    
T  2066130 gaagacctagaaaaattataaaagaaactactaaaaaagatctagagattaatgagttggata 2066192  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 344
Target Start/End: Original strand, 43475301 - 43475433
Alignment:
Q  212 agagaagacctttggattatgtaggaaggagagtacttaacacggagggtagtcaaatcattagaggcaaaagaagacctagaaaattataagagaaact 311  Q
    ||||||||||| | |||  ||||| ||||||||||  | | | ||||| |||||| |||| || ||| ||||| | || |||||||   |||||||||||    
T  43475301 agagaagacctgtagatgttgtagtaaggagagtagatcagatggaggatagtcagatcactataggaaaaagtaaacatagaaaaacttaagagaaact 43475400  T
Q  312 actaacaaagattcagatattaatgagttggat 344  Q
    | ||| |||||| |||| |||||||||||||||    
T  43475401 attaagaaagatccagagattaatgagttggat 43475433  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 33157982 - 33157919
Alignment:
Q  282 aagaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggat 344  Q
    ||||||||||||||||  |||||||||||||||||| ||| ||| | | |||||||||||||||    
T  33157982 aagaagacctagaaaacctataagagaaactactaaaaaatatttatagattaatgagttggat 33157919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 12577038 - 12576940
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggataggaatat 352  Q
    |||||||||||  |||| |||||||| | |||||||||| |||| || |||| |||||| ||| ||||||  ||| |||||||||||| |||| |||||    
T  12577038 ggagggtagtcctatcactagaggcagaggaagacctagaaaaactacaagataaactattaagaaagatctagagattaatgagttgaatagaaatat 12576940  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 27998574 - 27998640
Alignment:
Q  284 gaagacctagaaaat-tataagagaaactactaacaaagattcagatattaatgagttggataggaa 349  Q
    ||||||||||||||  |||||||||||||||||| ||||||  | | ||||||||||| ||||||||    
T  27998574 gaagacctagaaaaactataagagaaactactaagaaagatctacagattaatgagttagataggaa 27998640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 3775240 - 3775203
Alignment:
Q  260 gtagtcaaatcattagaggcaaaagaagacctagaaaa 297  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  3775240 gtagtcaaatcactagaggcagaagaagacctagaaaa 3775203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 28186906 - 28186861
Alignment:
Q  301 taagagaaactactaacaaagattcagatattaatgagttggatag 346  Q
    |||||||||||| ||| ||||||| ||| |||||||||||||||||    
T  28186906 taagagaaactattaagaaagatttagagattaatgagttggatag 28186861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 339
Target Start/End: Original strand, 11901 - 11986
Alignment:
Q  255 ggagggtagtcaaatcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagt 339  Q
    |||||||||| |||||| |||||||||||||||| |||| |||| |||||||||||||| ||| || |||  ||| ||||||||||    
T  11901 ggagggtagtgaaatcactagaggcaaaagaagaactagaaaaactataagagaaactattaagaaggatctagagattaatgagt 11986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 45594 - 45536
Alignment:
Q  282 aagaagacctagaaaattataagagaaactactaacaaagattcagatattaatgagtt 340  Q
    ||||| |||||||||| ||| |||||||||| ||| |||||||| || |||||||||||    
T  45594 aagaacacctagaaaactatcagagaaactattaagaaagattcggaaattaatgagtt 45536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 349
Target Start/End: Original strand, 66654 - 66736
Alignment:
Q  268 atcattagaggcaaaagaagacctag-aaaattataagagaaactactaacaaagattcagatattaatgagttggataggaa 349  Q
    ||||||||||||| | |||||||||| |||||||||| | ||| || ||| ||||||  ||| ||||||||||| ||||||||    
T  66654 atcattagaggcagaggaagacctagaaaaattataaaaaaaattattaagaaagatctagagattaatgagttagataggaa 66736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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