View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0730_low_15 (Length: 365)

Name: NF0730_low_15
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0730_low_15
NF0730_low_15
[»] chr6 (5 HSPs)
chr6 (164-336)||(5053912-5054084)
chr6 (17-106)||(5053767-5053856)
chr6 (17-57)||(34506-34546)
chr6 (18-57)||(9209935-9209974)
chr6 (17-57)||(1615224-1615264)
[»] chr7 (7 HSPs)
chr7 (163-300)||(36193437-36193574)
chr7 (13-106)||(36193619-36193712)
chr7 (17-57)||(17907725-17907765)
chr7 (16-57)||(33650871-33650912)
chr7 (17-57)||(38103616-38103656)
chr7 (17-57)||(45840997-45841037)
chr7 (17-57)||(47413716-47413756)
[»] scaffold0570 (1 HSPs)
scaffold0570 (17-57)||(949-989)
[»] chr8 (5 HSPs)
chr8 (17-57)||(32569711-32569751)
chr8 (17-57)||(15215413-15215453)
chr8 (17-57)||(35914602-35914642)
chr8 (17-57)||(39953265-39953305)
chr8 (17-57)||(44047533-44047573)
[»] chr4 (9 HSPs)
chr4 (17-57)||(7066500-7066540)
chr4 (22-57)||(40424576-40424611)
chr4 (23-56)||(8459056-8459089)
chr4 (17-57)||(15665342-15665382)
chr4 (17-57)||(23906298-23906338)
chr4 (17-57)||(25575065-25575105)
chr4 (17-57)||(28236423-28236463)
chr4 (17-57)||(49738551-49738591)
chr4 (25-57)||(54529667-54529699)
[»] chr1 (7 HSPs)
chr1 (17-57)||(48431400-48431440)
chr1 (17-57)||(4029363-4029403)
chr1 (21-57)||(7922070-7922106)
chr1 (17-57)||(12231599-12231639)
chr1 (17-57)||(28090695-28090735)
chr1 (17-57)||(28533708-28533748)
chr1 (17-57)||(51584985-51585025)
[»] chr5 (4 HSPs)
chr5 (17-57)||(28123-28163)
chr5 (17-57)||(7359262-7359302)
chr5 (17-57)||(18855848-18855888)
chr5 (29-57)||(22703889-22703917)
[»] chr3 (2 HSPs)
chr3 (17-57)||(14415261-14415301)
chr3 (17-57)||(45374478-45374518)
[»] chr2 (4 HSPs)
chr2 (17-57)||(3866313-3866353)
chr2 (17-57)||(5758996-5759036)
chr2 (17-57)||(31959762-31959802)
chr2 (17-57)||(36183692-36183732)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 164 - 336
Target Start/End: Original strand, 5053912 - 5054084
Alignment:
Q  164 cgttgatgctagagagggcatggcaaaagttgaaggaaacaaagcacatattagagtagtttttgtatgtatgctatgtagaatcatttatcatgaattg 263  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5053912 cgttgatgctagagagtgcatgggaaaagttgaaggaaccaaagcaaatgttagagtagtttttgtatgtatgctatgtagaatcatttatcatgaattg 5054011  T
Q  264 gtggtatttgtgagcggatgatcatgtttttgctttgatttattgctttgtcatttgtgaatttattagtatt 336  Q
     ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5054012 atggtatttgtgagcggatgattatgtttttgctctgatttattgctttgtcatttgtgaatttattagtatt 5054084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 5053767 - 5053856
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttgatagattcagttgaaggttggatgacagaagagaggaatgatgcaacag 106  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5053767 tagccgaccccatttagtaggataaggcttggttgttgttgatagattcaattgaaggttggatgacaaaagagaggaatgatgcaacag 5053856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 34546 - 34506
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  34546 tagctgaccccacttagtgggataagacttggttgttgttg 34506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 9209974 - 9209935
Alignment:
Q  18 agctgaccccatttagtaggataagacttggttgttgttg 57  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  9209974 agctgaccccatttagcgggataagacttggttgttgttg 9209935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 1615264 - 1615224
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| |||| |||||||| ||||||||||||||||||||||    
T  1615264 tagccgacctcatttagtgggataagacttggttgttgttg 1615224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 163 - 300
Target Start/End: Complemental strand, 36193574 - 36193437
Alignment:
Q  163 ccgttgatgctagagagggcatggcaaaagttgaaggaaacaaagcacatattagagtagtttttgtatgtatgctatgtagaatcatttatcatgaatt 262  Q
    |||||||||||||||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36193574 ccgttgatgctagagagggcatggaaaaagctgaaggaaaccaagcacatgttagagtagtttttgtatgtatgctatgtagaaccatttatcatgaatt 36193475  T
Q  263 ggtggtatttgtgagcggatgatcatgtttttgctttg 300  Q
    | ||||||||||||||||||||| ||||||||||||||    
T  36193474 gatggtatttgtgagcggatgattatgtttttgctttg 36193437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 36193712 - 36193619
Alignment:
Q  13 aatatagctgaccccatttagtaggataagacttggttgttgttgatagattcagttgaaggttggatgacagaagagaggaatgatgcaacag 106  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||||    
T  36193712 aatatagctgaccccacttagtaggacaagacttggttgttgttgatagactcaattcaaggttggatgacagaagtgaggaatgatgcaacag 36193619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 17907765 - 17907725
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  17907765 tagccgaccccatttagcaggataagacttggttgttgttg 17907725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 33650912 - 33650871
Alignment:
Q  16 atagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  33650912 atagctgaccccacttagtgggataaggcttggttgttgttg 33650871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 38103656 - 38103616
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  38103656 tagccgaccccagttagtgggataagacttggttgttgttg 38103616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 45841037 - 45840997
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| | ||||||||||||||||||||    
T  45841037 tagctgaccccaattagtggtataagacttggttgttgttg 45840997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 47413756 - 47413716
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| ||||||| ||||||||||||||    
T  47413756 tagctgaccccacttagtgggataaggcttggttgttgttg 47413716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 989 - 949
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  989 tagctgaccccatttagtgggataaggcttggttgttgttg 949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 32569751 - 32569711
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  32569751 tagccgaccccatttagtgggataagacttggttgttgttg 32569711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 15215453 - 15215413
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  15215453 tagccgaccccacttagtaggataaggcttggttgttgttg 15215413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 35914642 - 35914602
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| |||||  |||||||||||||||||||||    
T  35914642 tagctgaccccacttagtgagataagacttggttgttgttg 35914602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 39953305 - 39953265
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  39953305 tagccgaccccacttagtgggataagacttggttgttgttg 39953265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 44047573 - 44047533
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| ||||||| ||||||||||||||    
T  44047573 tagctgaccccacttagtgggataaggcttggttgttgttg 44047533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 7066540 - 7066500
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  7066540 tagctgaccccatttagtgggataaggcttggttgttgttg 7066500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 40424576 - 40424611
Alignment:
Q  22 gaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| |||||||||||||||||||||||||||||||    
T  40424576 gacctcatttagtaggataagacttggttgttgttg 40424611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 8459089 - 8459056
Alignment:
Q  23 accccatttagtaggataagacttggttgttgtt 56  Q
    |||||||||||| |||||||||||||||||||||    
T  8459089 accccatttagtgggataagacttggttgttgtt 8459056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 15665342 - 15665382
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| ||||||| ||||||||||||||    
T  15665342 tagctgaccccacttagtgggataaggcttggttgttgttg 15665382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 23906338 - 23906298
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| ||||||| ||||||||||||||    
T  23906338 tagctgaccccacttagtgggataaggcttggttgttgttg 23906298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 25575065 - 25575105
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||||||||| ||||||| ||||||||||||||    
T  25575065 tagcagaccccatttagtgggataaggcttggttgttgttg 25575105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 28236423 - 28236463
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  28236423 tagccgaccccacttagtgggataagacttggttgttgttg 28236463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 49738591 - 49738551
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||||||||| ||||||| ||||||||||||||    
T  49738591 tagccgaccccatttagtgggataaggcttggttgttgttg 49738551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 54529667 - 54529699
Alignment:
Q  25 cccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||| ||||||||||||||||||||||    
T  54529667 cccatttagtgggataagacttggttgttgttg 54529699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 48431440 - 48431400
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  48431440 tagctgaccccacttagtaggataaggcttggttgttgttg 48431400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 4029363 - 4029403
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  4029363 tagccgaccccacttagtgggataagacttggttgttgttg 4029403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 7922070 - 7922106
Alignment:
Q  21 tgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  7922070 tgaccccacttagtgggataagacttggttgttgttg 7922106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 12231599 - 12231639
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  12231599 tagccgaccccacttagtaggataaggcttggttgttgttg 12231639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 28090735 - 28090695
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  28090735 tagccgaccccacttagtgggataagacttggttgttgttg 28090695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 28533708 - 28533748
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  28533708 tagccgaccccacttagtgggataagacttggttgttgttg 28533748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 51584985 - 51585025
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  51584985 tagcagaccccacttagtaggataaggcttggttgttgttg 51585025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 28123 - 28163
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  28123 tagctgaccccatttagttagataagacttggtttttgttg 28163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 7359302 - 7359262
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| ||| ||||||||||||||||||    
T  7359302 tagctgaccccacttagtgggacaagacttggttgttgttg 7359262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 18855848 - 18855888
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  18855848 tagccgaccccacttagtgggataagacttggttgttgttg 18855888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 22703889 - 22703917
Alignment:
Q  29 tttagtaggataagacttggttgttgttg 57  Q
    |||||||||||||||||||||||||||||    
T  22703889 tttagtaggataagacttggttgttgttg 22703917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 14415301 - 14415261
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  14415301 tagccgaccccacttagtgggataagacttggttgttgttg 14415261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 45374518 - 45374478
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| ||||||| ||||||||||||||    
T  45374518 tagctgaccccacttagtgggataaggcttggttgttgttg 45374478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 3866313 - 3866353
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  3866313 tagccgaccccacttagtaggataaggcttggttgttgttg 3866353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 5759036 - 5758996
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||||||||||| ||||| ||||||| ||||||||||||||    
T  5759036 tagctgaccccacttagttggataaggcttggttgttgttg 5758996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 31959762 - 31959802
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  31959762 tagcagaccccacttagtaggataaggcttggttgttgttg 31959802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 36183692 - 36183732
Alignment:
Q  17 tagctgaccccatttagtaggataagacttggttgttgttg 57  Q
    |||| ||||||| ||||||||||||| ||||||||||||||    
T  36183692 tagccgaccccacttagtaggataaggcttggttgttgttg 36183732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3296 times since January 2019
Visitors: 4812