View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0730_low_18 (Length: 337)
Name: NF0730_low_18
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0730_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 34371380 - 34371689
Alignment:
| Q |
18 |
gttgtatcccaaaatcctgattacgagaagattcaaagacaaattgctgatggtttaggtttggagttaaaagggcagagtttggaaggaaggggttggg |
117 |
Q |
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| T |
34371380 |
gttgtatcccaaaatcctgattacgagaagattcaaagacaaattgctgatggtttaggtttggagttaaaagggcagagtttggaaggaaggggttggg |
34371479 |
T |
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| Q |
118 |
aaatatttcaaaggtttaaagaatttgaagagaagaatgttaaggtgctaatagtcttagatgatgtgtggaaagcacttaatttggagttgataggaat |
217 |
Q |
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| T |
34371480 |
aaatatttcaaaggtttaaagaatttgaagagaagaatgttaaggtgctaatagtcttagatgatgtgtggaaagaacttaattttgagttgataggact |
34371579 |
T |
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| Q |
218 |
ttcttctcaagaccatcagaaatgtataaaaatattattcacatcacgagatgaaatggtgtgccaacagaatagaagccaagataatgtacatgtctct |
317 |
Q |
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| T |
34371580 |
ttcttctcaagaccatcagaaatgtataaaaatattattcacatcacgagatgaaaaggtgtgccaacagaatagaagccaagataatgtacatgtctct |
34371679 |
T |
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| Q |
318 |
gtgctgctcc |
327 |
Q |
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||| |||||| |
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| T |
34371680 |
gtgttgctcc |
34371689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 34555148 - 34555094
Alignment:
| Q |
22 |
tatcccaaaatcctgattacgagaagattcaaagacaaattgctgatggtttagg |
76 |
Q |
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| T |
34555148 |
tatcccaaaatcctgattacaagtatatccaaagtcaaattgctgattgtttagg |
34555094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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