View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0730_low_2 (Length: 669)
Name: NF0730_low_2
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0730_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 77 - 504
Target Start/End: Original strand, 31553486 - 31553913
Alignment:
| Q |
77 |
atatatatgggttgaaatgtttatgtattgattgcgatgatgacgatgatgatggatatttgttttgttgcagataacatttgagctgacagttaaacag |
176 |
Q |
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| T |
31553486 |
atatatgtgggttgaaatgtttatgtattgattgcgatgatgacgatgatgatggatatttgttttgttgcagataacatttgagttgacagttaaacag |
31553585 |
T |
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| Q |
177 |
ctgatgagttttgatccagatgaatggactgagagtttaaggaaagagtacatgcttgtaattgaagggtttttcactctcccatttcctcttttctcta |
276 |
Q |
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| T |
31553586 |
ctgatgagttttgatccagatgaatggactgagagtttaaggaaagagtacatgcttgtaattgaagggtttttcactctcccatttcctcttttctcta |
31553685 |
T |
|
| Q |
277 |
ccacctaccgtagagccatcaaggtgcatgcacctttattttattttttcctttatgagtttaatagatatgtatcatcgtaccaaatttatcaatatca |
376 |
Q |
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| T |
31553686 |
ccacctaccgtagagccatcaaggtgcatgcacctttattttattttttcctttatgagtttaatagatatgtatcatcgtaccaaatttatcaatatca |
31553785 |
T |
|
| Q |
377 |
tatttgttcgagtggaactatattcaaatctttaaacgggtcaaagtttcataccttgtgttaatgtgaatggaaggaacgactcatcaaaaaatagtgt |
476 |
Q |
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| T |
31553786 |
tatttgttcgagtggaactatattcaaatctttaaacgggtcaaagtttcataccttgtgttaatgtgattggaaggaacgactcatcaaaaaatagtgt |
31553885 |
T |
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| Q |
477 |
aaaaatttttatgcatatattcaatcac |
504 |
Q |
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| T |
31553886 |
aaaaaattttatgcatatattcaatcac |
31553913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 570 - 640
Target Start/End: Original strand, 31553979 - 31554047
Alignment:
| Q |
570 |
gacaagtaaattagtatatatgtgtgtaatttgatatttttaggcaagaacaaaggtggcagaggcactga |
640 |
Q |
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| T |
31553979 |
gacaagtaaattagtata--tgtgtgtaatttgatatttttaggcaagaacaaaggtggcagaggcactga |
31554047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 144 - 301
Target Start/End: Original strand, 35476051 - 35476208
Alignment:
| Q |
144 |
ttgcagataacatttgagctgacagttaaacagctgatgagttttgatccagatgaatggactgagagtttaaggaaagagtacatgcttgtaattgaag |
243 |
Q |
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||||||||||| |||||| ||||||| || |||||||||||||||||||||| |||||||||||||| | |||||||||||||| | || || ||||||| |
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| T |
35476051 |
ttgcagataacgtttgagttgacagtgaagcagctgatgagttttgatccaggtgaatggactgagactctaaggaaagagtacgttctcgtgattgaag |
35476150 |
T |
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| Q |
244 |
ggtttttcactctcccatttcctcttttctctaccacctaccgtagagccatcaaggt |
301 |
Q |
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| T |
35476151 |
gattttttacccttcccttaccactcctctctagtacctaccgcagagcaatcaaggt |
35476208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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