View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0730_low_20 (Length: 330)
Name: NF0730_low_20
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0730_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 120 - 299
Target Start/End: Complemental strand, 39528751 - 39528573
Alignment:
| Q |
120 |
gtagtagatttcacattgtggcgtagatgctattttacccnnnnnnnnnngcatattttgaatgtagtctattttaactccacagggatactgcagggca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39528751 |
gtagtagatttcacattgtggcgtagatgctattttacccatttttttt-gcatattttgaatgtagtctattttaactccacagggatactgcagggca |
39528653 |
T |
|
| Q |
220 |
agaaagatttagaagcctcattccaagttatataagagattcttcggtcgccgttattgtgtatgacgttgctagtaagt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39528652 |
agaaagatttagaagcctcattccaagttatataagagattcttcggtcgccgttattgtgtatgacgttgctagtaagt |
39528573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 39529146 - 39529025
Alignment:
| Q |
1 |
caaatttgttaatcgtctacatttcaggcgataattggtattgactttttgtcaaaaacaatgtaccttgaagatcgaacggttcgtttgcagctctggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39529146 |
caaatttgttaatcgtctacatttcaggcgacaattggtattgactttttgtcaaaaacaatgtaccttgaagatcgaacagttcgtttgcagctctggt |
39529047 |
T |
|
| Q |
101 |
atgtagtattctaaaagttgta |
122 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39529046 |
atgtagtattctaaaagttgta |
39529025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 37853280 - 37853183
Alignment:
| Q |
202 |
cagggatactgcagggcaagaaagatttagaagcctcattccaagttatataagagattcttcggtcgccgttattgtgtatgacgttgctagtaagt |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| || || |||||||| ||||| || || ||||||| |
|
|
| T |
37853280 |
cagggatactgcaggccaagaaagatttagaagtctcattccaagctacataagagattcttctgttgctgttattgtatatgatgtagccagtaagt |
37853183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 37853472 - 37853408
Alignment:
| Q |
37 |
ggtattgactttttgtcaaaaacaatgtaccttgaagatcgaacggttcgtttgcagctctggta |
101 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
37853472 |
ggtattgattttttgtcgaaaacaatgtaccttgaagatagaactgttcgtttgcagctttggta |
37853408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 4582024 - 4582077
Alignment:
| Q |
33 |
aattggtattgactttttgtcaaaaacaatgtaccttgaagatcgaacggttcg |
86 |
Q |
| |
|
|||||||||||| ||| | |||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
4582024 |
aattggtattgattttctatcaaaaaccatgtatcttgaagatcgaaccgttcg |
4582077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3876 times since January 2019
Visitors: 4823