View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0730_low_21 (Length: 318)
Name: NF0730_low_21
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0730_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 47574899 - 47575177
Alignment:
| Q |
13 |
aatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaaaggttgttatgc |
112 |
Q |
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| T |
47574899 |
aatatgcaatgcatggatatttttctgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaaaggttgttatgc |
47574998 |
T |
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| Q |
113 |
tgaatcagagtgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcattatagagttgaaaaaatga-nnnnnnncattaacaaa |
211 |
Q |
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| T |
47574999 |
tgaatcagaatgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcattatagagttgaaaaaatgattttttttcattaacaaa |
47575098 |
T |
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| Q |
212 |
tgaatattgtaggcttggacaaaatgggcagagcaaacaccaatggaactaatggatcctaatatagaaggaacttatt |
290 |
Q |
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| T |
47575099 |
tggatattgtaggcttggacaaaatggccagagcaaacaccaatggaactaatggatcctaatatagaaggaacttatt |
47575177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 13 - 290
Target Start/End: Original strand, 47584584 - 47584865
Alignment:
| Q |
13 |
aatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaaaggttgttatgc |
112 |
Q |
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| T |
47584584 |
aatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagattattagtggaaagaggaaaggttgttcggc |
47584683 |
T |
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| Q |
113 |
tgaatcagagtgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcat-tatagag---ttgaaaaaatgannnnnnncattaac |
208 |
Q |
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| T |
47584684 |
tgaatcagagtgtgttgatgacatccggagatatgtgagtcaaaaatttcttagacttctcttgaatagagtttttgaaagaattgttttcttaattgac |
47584783 |
T |
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| Q |
209 |
aaatgaatattgtaggcttggacaaaatgggcagagcaaacaccaatggaactaatggatcctaatatagaaggaacttatt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || ||||||||||||| |
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| T |
47584784 |
aaatgaatattgtaggcttggacaaaatgggcagagcaaacaccacttgaactaatggatcctagcatggaaggaacttatt |
47584865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 47627682 - 47627769
Alignment:
| Q |
13 |
aatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
100 |
Q |
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| T |
47627682 |
aatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaa |
47627769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 10401509 - 10401422
Alignment:
| Q |
13 |
aatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
100 |
Q |
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|||||||||||| |||| | ||||| | ||| |||||||| |||||||| ||| ||||| || | |||||||||| |||||||||||| |
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| T |
10401509 |
aatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaagaa |
10401422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 20233515 - 20233570
Alignment:
| Q |
45 |
tctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
100 |
Q |
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|||||||| |||||||| ||| |||||||| |||||||||||| ||||||||||| |
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| T |
20233515 |
tctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaagaa |
20233570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 22127499 - 22127554
Alignment:
| Q |
45 |
tctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
100 |
Q |
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|||||||| |||||||| ||| |||||||| |||||||||||| ||||||||||| |
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| T |
22127499 |
tctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaagaa |
22127554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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