View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0730_low_6 (Length: 577)
Name: NF0730_low_6
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0730_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 33 - 570
Target Start/End: Original strand, 3800684 - 3801223
Alignment:
| Q |
33 |
cataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtca |
132 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3800684 |
cataccctaatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttataagtca |
3800783 |
T |
|
| Q |
133 |
ttgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgt |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3800784 |
ttgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttctcaataaatcgtatatttgt |
3800883 |
T |
|
| Q |
233 |
gatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatcaagtagttggtgatgatg |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3800884 |
gatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtgtatcaagtagttggtgatgatg |
3800983 |
T |
|
| Q |
333 |
acataaaggcaatgcgtttgaaaatgaagaaaatgactattaataatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggc |
432 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800984 |
acataaaggcaatgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggc |
3801083 |
T |
|
| Q |
433 |
gaattattaatgtatttataatctattacttgttgttttgaattagtgctgttctcttttt--tctttgtatatatgttcatggacacttctcggattag |
530 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| || |||||||| ||||| |
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| T |
3801084 |
gaattattaatgtgtttataatctattacttgttgttttgaattagtgttgttctcttttttctctttctatatatgttcacagatacttctcgaattag |
3801183 |
T |
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| Q |
531 |
atgtgttctggtcttggacacacgacaccacacctatgat |
570 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||| |
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| T |
3801184 |
atgtgttctggtctcggacacacgacaccacacttatgat |
3801223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 33 - 485
Target Start/End: Complemental strand, 3789423 - 3788968
Alignment:
| Q |
33 |
cataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtca |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
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|
| T |
3789423 |
cataccctaatgacttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtca |
3789324 |
T |
|
| Q |
133 |
ttgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgt |
232 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| |
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|
| T |
3789323 |
ctgtggatggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgt |
3789224 |
T |
|
| Q |
233 |
gatgtgtggaagactggacttgaattagagaaagatgatgatggttatatatcaaggaaagagataaagaagaaggtggatcaagtagttggtgatgatg |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3789223 |
gatgtgtggaagactggacttgaattagagaaagatgatgatggatttatatcaaggcaagagataaagaagaaggtggatcaagtagttggtgatgatg |
3789124 |
T |
|
| Q |
333 |
acataaaggcaatgcgtttgaaaatgaagaaaatgactattaataatatagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggc |
432 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
3789123 |
acataaaggaaatgtgtttgaaaatgaagaaaatgactattactaatatagaagaaggtggccagtcatcacataatcttcaaaagtttattagttgggc |
3789024 |
T |
|
| Q |
433 |
gaattattaatgtatttataatctatta---cttgttgttttgaattagtgctgtt |
485 |
Q |
| |
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||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
3789023 |
gaattattaatgtttttataatctattatttcttgttgttttgaattagtggtgtt |
3788968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 30 - 276
Target Start/End: Complemental strand, 3780368 - 3780122
Alignment:
| Q |
30 |
atgcataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgag |
129 |
Q |
| |
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||||||||||| |||| || | ||||| |||||| || |||||||| ||||| || |||| || |||||||| || || || |||||||| || || || |
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| T |
3780368 |
atgcataccctgatgaatttcttggaactaaaggaaagattgttggatgggcgccgcaaaagaagatattgaaccaccctgctattgcttgtttcattag |
3780269 |
T |
|
| Q |
130 |
tcattgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatt |
229 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| || ||||||||||||||||||||||| ||| | |||||||||| | || || || ||| || |
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|
| T |
3780268 |
tcattgcggatggaattctaccgtagaaggtgtatatagcggtgtacctttcttgtgttggccgtttcacggtgatcaatttatgaacaagtcatatgtt |
3780169 |
T |
|
| Q |
230 |
tgtgatgtgtggaagactggacttgaattagagaaagatgatgatgg |
276 |
Q |
| |
|
||||||||||||||| |||||||||| |||| || ||||| ||||| |
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|
| T |
3780168 |
tgtgatgtgtggaaggttggacttgaactagacaaggatgaagatgg |
3780122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 3768090 - 3767850
Alignment:
| Q |
30 |
atgcataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgag |
129 |
Q |
| |
|
||||||||||| |||| |||| |||| |||||| || || ||| |||||| ||| || | || |||||||| ||||| || || ||||| || || || |
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|
| T |
3768090 |
atgcataccctgatgaattcctcggaactaaaggaaagatcgttagttgggtaccgcagaagaagatattgaaccatcctgctatagcttgtttcattag |
3767991 |
T |
|
| Q |
130 |
tcattgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatt |
229 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| || ||||| |||||||||| |||||||||||| || |||||||||| || || || |||||| |
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| T |
3767990 |
tcattgtggttggaattctactatagaaggtgtatattctggtatacctttcttatgttggccatttgcaactgatcaatttacgaacaagtcatatatt |
3767891 |
T |
|
| Q |
230 |
tgtgatgtgtggaagactggacttgaattagagaaagatga |
270 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || ||||| |
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|
| T |
3767890 |
tgtgatgtgtggaaggttggatttgaattagacaaggatga |
3767850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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