View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0730_low_7 (Length: 512)

Name: NF0730_low_7
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0730_low_7
NF0730_low_7
[»] chr4 (20 HSPs)
chr4 (1-496)||(42391868-42392371)
chr4 (354-499)||(39868921-39869064)
chr4 (376-499)||(21623096-21623219)
chr4 (401-499)||(21621869-21621967)
chr4 (367-465)||(47874576-47874674)
chr4 (379-467)||(31844746-31844834)
chr4 (367-466)||(53771061-53771160)
chr4 (378-462)||(54574448-54574532)
chr4 (387-499)||(2786253-2786367)
chr4 (375-465)||(47878497-47878587)
chr4 (354-427)||(53770332-53770405)
chr4 (375-499)||(4703196-4703320)
chr4 (357-465)||(26685435-26685538)
chr4 (400-499)||(25810392-25810491)
chr4 (379-465)||(48740033-48740119)
chr4 (356-421)||(39870731-39870796)
chr4 (415-491)||(24746062-24746138)
chr4 (391-499)||(42278085-42278193)
chr4 (404-499)||(24753540-24753635)
chr4 (67-100)||(4010590-4010623)
[»] chr7 (32 HSPs)
chr7 (371-496)||(2677768-2677893)
chr7 (371-489)||(24844589-24844707)
chr7 (392-496)||(19985248-19985352)
chr7 (375-427)||(44333159-44333211)
chr7 (363-497)||(25621702-25621836)
chr7 (367-465)||(48777268-48777366)
chr7 (368-489)||(8375572-8375693)
chr7 (375-479)||(48646069-48646173)
chr7 (376-499)||(48788651-48788774)
chr7 (370-496)||(39824144-39824270)
chr7 (354-499)||(10899052-10899197)
chr7 (367-427)||(8374926-8374986)
chr7 (367-499)||(12223678-12223810)
chr7 (375-423)||(35727719-35727767)
chr7 (367-464)||(43457469-43457566)
chr7 (375-499)||(7258295-7258419)
chr7 (391-499)||(24288845-24288953)
chr7 (376-499)||(42477402-42477524)
chr7 (373-427)||(8048835-8048889)
chr7 (382-496)||(22621154-22621268)
chr7 (375-465)||(44334462-44334552)
chr7 (357-496)||(8879525-8879665)
chr7 (367-427)||(34704921-34704981)
chr7 (367-427)||(39708115-39708175)
chr7 (367-425)||(21062829-21062887)
chr7 (419-489)||(24844737-24844807)
chr7 (391-465)||(34888936-34889010)
chr7 (394-427)||(48647494-48647527)
chr7 (391-499)||(7259663-7259771)
chr7 (375-427)||(30925059-30925111)
chr7 (395-427)||(44529068-44529100)
chr7 (367-427)||(46286515-46286575)
[»] chr8 (19 HSPs)
chr8 (367-499)||(32898424-32898556)
chr8 (407-499)||(28524810-28524902)
chr8 (367-499)||(10407563-10407695)
chr8 (376-482)||(8569429-8569535)
chr8 (354-496)||(31075272-31075413)
chr8 (365-499)||(35177405-35177539)
chr8 (375-479)||(35178803-35178907)
chr8 (354-465)||(24198933-24199044)
chr8 (354-497)||(28006576-28006718)
chr8 (354-497)||(28063879-28064021)
chr8 (354-499)||(31073993-31074138)
chr8 (367-434)||(41754010-41754077)
chr8 (394-499)||(28619028-28619133)
chr8 (378-427)||(30134589-30134638)
chr8 (375-428)||(41754845-41754898)
chr8 (396-499)||(5738002-5738105)
chr8 (370-465)||(5965455-5965550)
chr8 (400-465)||(12637771-12637836)
chr8 (401-493)||(43190929-43191021)
[»] chr2 (30 HSPs)
chr2 (375-496)||(38853775-38853896)
chr2 (375-499)||(31091506-31091630)
chr2 (372-499)||(15441950-15442077)
chr2 (375-465)||(32766252-32766342)
chr2 (402-496)||(37607149-37607243)
chr2 (368-465)||(34582683-34582780)
chr2 (354-466)||(8420012-8420124)
chr2 (367-427)||(17330281-17330341)
chr2 (354-492)||(31443231-31443368)
chr2 (376-496)||(10728922-10729044)
chr2 (375-427)||(24459497-24459549)
chr2 (376-499)||(17466807-17466930)
chr2 (406-477)||(26586296-26586367)
chr2 (365-496)||(31090174-31090305)
chr2 (416-463)||(31442394-31442441)
chr2 (397-479)||(14704048-14704130)
chr2 (393-499)||(18675122-18675228)
chr2 (400-489)||(9616024-9616113)
chr2 (376-465)||(12746214-12746303)
chr2 (367-499)||(34037652-34037784)
chr2 (375-427)||(39015025-39015077)
chr2 (409-499)||(12004976-12005066)
chr2 (354-427)||(2910099-2910172)
chr2 (375-492)||(11985711-11985828)
chr2 (375-496)||(33439261-33439382)
chr2 (407-496)||(38854841-38854930)
chr2 (357-433)||(8420966-8421041)
chr2 (367-427)||(24458072-24458132)
chr2 (367-479)||(32764950-32765062)
chr2 (375-427)||(40000385-40000437)
[»] chr5 (26 HSPs)
chr5 (367-499)||(2464681-2464813)
chr5 (382-497)||(546017-546132)
chr5 (354-423)||(18400189-18400258)
chr5 (374-499)||(25590450-25590574)
chr5 (375-499)||(28591092-28591217)
chr5 (378-499)||(32640311-32640432)
chr5 (367-499)||(21069301-21069433)
chr5 (376-490)||(12445405-12445518)
chr5 (410-496)||(19271397-19271483)
chr5 (415-496)||(43099122-43099203)
chr5 (371-479)||(2466773-2466881)
chr5 (391-499)||(4592897-4593005)
chr5 (375-465)||(9538062-9538152)
chr5 (367-464)||(8074463-8074560)
chr5 (367-499)||(9537035-9537166)
chr5 (378-422)||(14891199-14891243)
chr5 (376-427)||(16611749-16611800)
chr5 (376-427)||(19182971-19183022)
chr5 (367-425)||(40612712-40612770)
chr5 (375-496)||(26327054-26327175)
chr5 (354-398)||(18004637-18004681)
chr5 (406-462)||(35538317-35538373)
chr5 (391-425)||(13651173-13651207)
chr5 (379-433)||(19186265-19186319)
chr5 (368-420)||(13483218-13483270)
chr5 (395-427)||(28589739-28589771)
[»] chr1 (25 HSPs)
chr1 (367-499)||(32665749-32665881)
chr1 (367-427)||(5782426-5782486)
chr1 (376-496)||(11060766-11060886)
chr1 (406-496)||(1001884-1001974)
chr1 (375-479)||(7945553-7945657)
chr1 (400-499)||(39725384-39725483)
chr1 (392-497)||(8975196-8975301)
chr1 (354-465)||(1001153-1001264)
chr1 (372-499)||(10333165-10333292)
chr1 (367-499)||(6612431-6612563)
chr1 (369-465)||(7944169-7944265)
chr1 (367-499)||(9339658-9339790)
chr1 (392-496)||(11829946-11830050)
chr1 (372-499)||(1407657-1407784)
chr1 (380-427)||(9341076-9341123)
chr1 (367-465)||(10332998-10333096)
chr1 (406-496)||(26518160-26518250)
chr1 (406-496)||(50107185-50107275)
chr1 (367-499)||(22856692-22856824)
chr1 (400-496)||(26519084-26519180)
chr1 (371-423)||(52440614-52440666)
chr1 (382-477)||(5783110-5783205)
chr1 (374-435)||(534600-534661)
chr1 (59-100)||(7528122-7528163)
chr1 (440-496)||(15222337-15222393)
[»] scaffold0039 (3 HSPs)
scaffold0039 (365-499)||(79083-79217)
scaffold0039 (367-436)||(74355-74424)
scaffold0039 (375-427)||(79734-79786)
[»] chr3 (34 HSPs)
chr3 (367-479)||(17700530-17700642)
chr3 (367-479)||(17701918-17702030)
chr3 (392-496)||(39497244-39497348)
chr3 (367-499)||(52316991-52317123)
chr3 (357-465)||(19114535-19114643)
chr3 (391-499)||(53959079-53959187)
chr3 (354-496)||(40205880-40206023)
chr3 (367-465)||(40206951-40207049)
chr3 (375-427)||(19331128-19331180)
chr3 (367-499)||(20464081-20464213)
chr3 (371-427)||(52318368-52318424)
chr3 (367-433)||(2591639-2591705)
chr3 (367-465)||(2592020-2592118)
chr3 (375-465)||(33428448-33428538)
chr3 (367-465)||(45600952-45601049)
chr3 (375-427)||(48573005-48573057)
chr3 (367-499)||(55388085-55388217)
chr3 (392-499)||(36278989-36279096)
chr3 (391-476)||(11773053-11773138)
chr3 (384-464)||(26106985-26107065)
chr3 (375-427)||(34263825-34263877)
chr3 (407-499)||(40318694-40318786)
chr3 (376-427)||(19115197-19115248)
chr3 (417-496)||(30360447-30360526)
chr3 (376-427)||(47075402-47075453)
chr3 (392-427)||(49261585-49261620)
chr3 (375-465)||(26652617-26652707)
chr3 (367-489)||(47118040-47118162)
chr3 (375-421)||(47428614-47428660)
chr3 (394-499)||(36280296-36280401)
chr3 (382-427)||(47427887-47427932)
chr3 (379-428)||(50753841-50753890)
chr3 (369-465)||(48808380-48808476)
chr3 (378-426)||(55389521-55389569)
[»] scaffold0237 (2 HSPs)
scaffold0237 (376-495)||(1707-1825)
scaffold0237 (417-495)||(3009-3086)
[»] chr6 (11 HSPs)
chr6 (374-489)||(12676459-12676574)
chr6 (376-495)||(29845502-29845620)
chr6 (417-495)||(29856807-29856884)
chr6 (367-433)||(30748011-30748077)
chr6 (367-427)||(31218967-31219027)
chr6 (400-495)||(24621345-24621440)
chr6 (376-433)||(6468826-6468883)
chr6 (400-496)||(24621122-24621218)
chr6 (367-428)||(23507961-23508021)
chr6 (380-496)||(5265224-5265339)
chr6 (375-427)||(31219211-31219263)
[»] scaffold0034 (1 HSPs)
scaffold0034 (380-465)||(116080-116165)
[»] scaffold0232 (1 HSPs)
scaffold0232 (73-102)||(21423-21452)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 42392371 - 42391868
Alignment:
Q  1 gggaaagaggttcatacca-ggtgttgagtgacctaatggatatacttcttgttaagttgttataactaggagtgtgcatggttcataaaccaaaccaaa 99  Q
    ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42392371 gggaaagaggttcataccaaggtgttgagtgacgtaatggttatacttcttgttaagttgttataactaggagtgtgcatggttcataaatcaaaccaaa 42392272  T
Q  100 ccatatccaatttatggtttggtttcttaaactgtttcagaaaaaaccaannnnnnn-acgaaacagttcaggtttgctttgggtccggttcagaaccgg 198  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||        |||||| |||||| ||||| ||||||||||||||||||| ||    
T  42392271 ccatattcaatttatggtttggtttcttaacctgtttcagaaaaaaccaattttttttacgaaatagttcaagtttgttttgggtccggttcagaactgg 42392172  T
Q  199 tttgtgttnnnnnnn---gcggtttatttattttaccagtttctcaaacagtttccatggcttcccttcttagcttcttgaagtttatcttgccttttct 295  Q
    ||||  ||          |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  42392171 tttgcattaaaaaaaaaagcggtttattcattttaccagtttctcaaacagttttcatggcttcccttcttagcttcttgaagtttatcttgccttgtct 42392072  T
Q  296 aaggttgttttaaggatgttagttctaggtcattttgatgatgtttcattagt-atgtaagtaaatgattaatttagtctctgactctgcacctcactgt 394  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| | ||||||||||||||| ||||||||||||    
T  42392071 aaggtagttttaaggatgttagttctaggtcattttgatgatgtttcattagtaatttgagtaaatgatcactttagtctctgactccgcacctcactgt 42391972  T
Q  395 cacataggtccctgactcatgattaaatacaaactagtcctta--aatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactg 492  Q
    |||||||||| |||||||||||||||||||||| |||||| ||  |||||| |||||| |||||||||||||| | | |||||||||||| | |||||||    
T  42391971 cacataggtctctgactcatgattaaatacaaattagtccctaataatgtgcacttcctttatcagtttagtcccagacgttaaaaacttctattaactg 42391872  T
Q  493 atga 496  Q
    ||||    
T  42391871 atga 42391868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 354 - 499
Target Start/End: Original strand, 39868921 - 39869064
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||  ||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||||| |||  |  | | || |||||||||    
T  39868921 agtaaattgttactttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagt--tcgactctgcacttccgtt 39869018  T
Q  454 atcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    |||| ||||||| | | ||||||| | || |||||| |||||||||    
T  39869019 atcactttagtctctgacgttaaataattatgttaagtgatgatgt 39869064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 499
Target Start/End: Complemental strand, 21623219 - 21623096
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    |||||||||| |||  |||||||  | ||||||| ||| ||||||||||||| |||||||| |||||| ||||| ||||||| ||||||| ||| |||||    
T  21623219 tgactctgcatctcgttgtcacaatgttccctgattcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgtta 21623120  T
Q  476 aaaacttttgttaactgatgatgt 499  Q
    || | || |||||||| |||||||    
T  21623119 aataattatgttaactaatgatgt 21623096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 499
Target Start/End: Original strand, 21621869 - 21621967
Alignment:
Q  401 ggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    ||||||||||||| ||||||||||||| ||||| || |||||| ||||||||||||| ||||||| | |  |||||| | || ||||||||||||||||    
T  21621869 ggtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgt 21621967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 465
Target Start/End: Original strand, 47874576 - 47874674
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||||||||| |||||| ||| || |||||||||||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| |||||||    
T  47874576 tttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatcactttagtc 47874674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 467
Target Start/End: Original strand, 31844746 - 31844834
Alignment:
Q  379 ctctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcac 467  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||| | |  |||||| |||||| ||| |||||    
T  31844746 ctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccctaactctacacttcccttatcactttggtcac 31844834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 367 - 466
Target Start/End: Complemental strand, 53771160 - 53771061
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| |||||||||||||||  ||||||||||||||||||||||  ||||||||||||  || || | | | || ||||||||||||| ||||||||    
T  53771160 tttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttatcactttagtca 53771061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 54574448 - 54574532
Alignment:
Q  378 actctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagttta 462  Q
    |||||||| ||| |||||||||||||| |||||||| |||||||||||||  ||| ||||| | || ||||||||||||| ||||    
T  54574448 actctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatcacttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 499
Target Start/End: Original strand, 2786253 - 2786367
Alignment:
Q  387 ctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcacc--ggcgttaaaaactttt 484  Q
    |||| ||||||| |||| | ||||||| ||||||||||||| || ||||| |||||| ||||||||||||| |||||| | |  | ||||||| | ||||    
T  2786253 ctcagtgtcacaaaggttcatgactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagttatcatgacgttaaataatttt 2786352  T
Q  485 gttaactgatgatgt 499  Q
    |||||||||| ||||    
T  2786353 gttaactgataatgt 2786367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 47878587 - 47878497
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    ||||||||||||||| |||| |||||||||||||||||  |||||||||||||  ||||| | | | |  ||||||||||||| |||||||    
T  47878587 ctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatcactttagtc 47878497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 427
Target Start/End: Original strand, 53770332 - 53770405
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||| | | ||||||||||||||||||||||| |  |||||||||| |||||||||  ||||||||||||    
T  53770332 agtaaatggtcactttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaa 53770405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 4703320 - 4703196
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    |||||||| || ||| ||||||||||||||||| |||||  ||||||||||||  |||| || | |||  ||||||||||||| ||||||| | ||| ||    
T  4703320 ctgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttatcactttagtctctggcatt 4703221  T
Q  475 aaaaacttttgttaactgatgatgt 499  Q
    ||| | || | |||| |||||||||    
T  4703220 aaataattctattaagtgatgatgt 4703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 465
Target Start/End: Complemental strand, 26685538 - 26685435
Alignment:
Q  357 aaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatc 456  Q
    ||||| ||| ||||||| ||||||||||||||| ||||||||||||||||| |||     ||||||||| |  ||||||| | | || ||||||||||||    
T  26685538 aaatggttattttagtccctgactctgcacctcgctgtcacataggtccctcact-----ttaaatacatagaagtccttgactatgcacttccgttatc 26685444  T
Q  457 agtttagtc 465  Q
    | |||||||    
T  26685443 actttagtc 26685435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 400 - 499
Target Start/End: Complemental strand, 25810491 - 25810392
Alignment:
Q  400 aggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    |||||||| | ||| ||||||||||||| ||| |  | |||||| ||||||| ||||| ||||||| | | |||||| ||||| ||||||||||||||||    
T  25810491 aggtccctcattcaagattaaatacaaagtagcctatgaatgtgcacttccgctatcactttagtctctgacgttaataacttctgttaactgatgatgt 25810392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 465
Target Start/End: Complemental strand, 48740119 - 48740033
Alignment:
Q  379 ctctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||||||||| |||||| ||| |||||||||||| ||||||||||||  |||||  || | || ||||| ||||||| |||||||    
T  48740119 ctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgttatcactttagtc 48740033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 39870796 - 39870731
Alignment:
Q  356 taaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaa 421  Q
    |||||||| | |||| |||||||||||||||||| |||||||||| || ||||| ||| |||||||    
T  39870796 taaatgatcactttaatctctgactctgcacctcgctgtcacataagttcctgagtcaagattaaa 39870731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 491
Target Start/End: Complemental strand, 24746138 - 24746062
Alignment:
Q  415 gattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaact 491  Q
    ||||||||||||| || |||||||||||| ||||||||||||| |||| ||  || ||||||| | |||| ||||||    
T  24746138 gattaaatacaaagtactccttaaatgtgcacttccgttatcactttaatccacgacgttaaataattttattaact 24746062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 499
Target Start/End: Original strand, 42278085 - 42278193
Alignment:
Q  391 ctgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaac 490  Q
    ||||||||||||||||||||||  |||||||||||||  ||| | | | | || ||||||||||||| |||| || | | |||||||||  | ||||||     
T  42278085 ctgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatcactttaatccctgacgttaaaaaaatctgttaag 42278184  T
Q  491 tgatgatgt 499  Q
    |||||||||    
T  42278185 tgatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 499
Target Start/End: Complemental strand, 24753635 - 24753540
Alignment:
Q  404 ccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    ||||||||||| |||||||| ||| ||   | | |||||| ||||| ||||||| ||||||||   |||||||| | |||||||||||||||||||    
T  24753635 ccctgactcataattaaatataaagtaactcctgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgt 24753540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 4010623 - 4010590
Alignment:
Q  67 taggagtgtgcatggttcataaaccaaaccaaac 100  Q
    |||| |||||||||||||||||||||||||||||    
T  4010623 taggggtgtgcatggttcataaaccaaaccaaac 4010590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 371 - 496
Target Start/End: Complemental strand, 2677893 - 2677768
Alignment:
Q  371 gtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccgg 470  Q
    |||| |||||||| |||||  ||||||| |||||  ||||||||||||||||||||| || ||| |||||||| |||| |||||||||||||||| |  |    
T  2677893 gtctttgactctgtacctcgttgtcacaaaggtctatgactcatgattaaatacaaagtattccctaaatgtgcactttcgttatcagtttagtccctcg 2677794  T
Q  471 cgttaaaaacttttgttaactgatga 496  Q
    ||||||||||||| ||||||||||||    
T  2677793 cgttaaaaactttagttaactgatga 2677768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 371 - 489
Target Start/End: Original strand, 24844589 - 24844707
Alignment:
Q  371 gtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccgg 470  Q
    ||||||||||||||||||| |||||||  |||||| | ||||| ||||||||||||| ||||| || |||||| |||||| |||||||||||||| |       
T  24844589 gtctctgactctgcacctcgctgtcaccaaggtccataactcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtctcaaa 24844688  T
Q  471 cgttaaaaacttttgttaa 489  Q
    |||||||||||||||||||    
T  24844689 cgttaaaaacttttgttaa 24844707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 392 - 496
Target Start/End: Complemental strand, 19985352 - 19985248
Alignment:
Q  392 tgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaact 491  Q
    ||||||| |||||| ||||||  ||||||||||||| ||||||||| ||||| | |||||||| ||||||| || | |  ||||||||||||||||||||    
T  19985352 tgtcacaaaggtccatgactcgagattaaatacaaagtagtccttagatgtgcatttccgttaccagtttaatccctgatgttaaaaacttttgttaact 19985253  T
Q  492 gatga 496  Q
    |||||    
T  19985252 gatga 19985248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 44333159 - 44333211
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44333159 ctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaa 44333211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 497
Target Start/End: Complemental strand, 25621836 - 25621702
Alignment:
Q  363 ttaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagttta 462  Q
    ||||||||||  || |||||||| ||||| || ||||||||   ||| ||| ||||||||||||| ||||  || |||||| ||||| ||||||| ||||    
T  25621836 ttaatttagtgcctcactctgcatctcaccgttacataggtttttgattcaggattaaatacaaattagtttttgaatgtgcacttctgttatcacttta 25621737  T
Q  463 gtcaccggcgttaaaaacttttgttaactgatgat 497  Q
    ||||| | ||||||| | |||||||||||||||||    
T  25621736 gtcactgacgttaaataattttgttaactgatgat 25621702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 465
Target Start/End: Original strand, 48777268 - 48777366
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||||||||| |||||| ||| |||||||||| ||||||||||||||||||||||||||  | ||| | | | || ||||||||||||| |||||||    
T  48777268 tttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttatcactttagtc 48777366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 489
Target Start/End: Complemental strand, 8375693 - 8375572
Alignment:
Q  368 ttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcac 467  Q
    |||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||||  |||   | | | || ||||||||||||| |||||||      
T  8375693 ttagtccctgacttcgcaccgcactgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatcaatttagtccg 8375594  T
Q  468 cggcgttaaaaacttttgttaa 489  Q
    || ||||||| | |||||||||    
T  8375593 cgacgttaaataattttgttaa 8375572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 479
Target Start/End: Original strand, 48646069 - 48646173
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    |||||| |||||||| ||||||||||||||||||||||| |||||||||||||  ||||| | | | |  ||||||||||||| ||||||| | | ||||    
T  48646069 ctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatcactttagtctctgtcgtt 48646168  T
Q  475 aaaaa 479  Q
    |||||    
T  48646169 aaaaa 48646173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 499
Target Start/End: Complemental strand, 48788774 - 48788651
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||||| |||  ||||  | | | || ||||||||||||| ||||||| | | |||||    
T  48788774 tgactttgcacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatcactttagtctctgacgtta 48788675  T
Q  476 aaaacttttgttaactgatgatgt 499  Q
    ||||  |||||||  |||||||||    
T  48788674 aaaaaatttgttaggtgatgatgt 48788651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 496
Target Start/End: Original strand, 39824144 - 39824270
Alignment:
Q  370 agtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccg 469  Q
    ||||||||||| | ||||| ||||||| | ||||  |||||||||||||||||||||| || ||  |||||||| ||||  ||||| ||||||||| | |    
T  39824144 agtctctgactttacaccttactgtcataaaggtatctgactcatgattaaatacaaaataatctctaaatgtgcacttatgttataagtttagtctctg 39824243  T
Q  470 gcgttaaaaacttttgttaactgatga 496  Q
     |  ||||| |||||||||||||||||    
T  39824244 tcagtaaaaccttttgttaactgatga 39824270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 499
Target Start/End: Complemental strand, 10899197 - 10899052
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||  ||| ||| ||| ||||||||||||||| ||||||||||| ||| |||| || |||||||||||||  ||||  | | | || |||||||||    
T  10899197 agtaaattgttactttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgtt 10899098  T
Q  454 atcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    |||| ||||||| | | |||||||||  | |||||| |||||||||    
T  10899097 atcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 8374926 - 8374986
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||||||  ||||||||||||    
T  8374926 tttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaa 8374986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 499
Target Start/End: Complemental strand, 12223810 - 12223678
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| ||||| |||||| ||| |||||||||||||||||||||| ||||||||| |||  ||||| | | | || | ||||||||| | ||||||||    
T  12223810 tttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgcagttccgttattactttagtca 12223711  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | |  |||||| | || |||||| |||||||||    
T  12223710 ctgatgttaaataattctgttaagtgatgatgt 12223678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 35727719 - 35727767
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaata 423  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35727719 ctgactctgcacctcgctgtcacataggtccctgactcaggattaaata 35727767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 464
Target Start/End: Original strand, 43457469 - 43457566
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagt 464  Q
    ||||||| |||| |||||| ||| ||||| ||||||||||||||||| |||||||||||||  |||||   | | || ||||||||||||| ||||||    
T  43457469 tttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgttatcactttagt 43457566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 499
Target Start/End: Original strand, 7258295 - 7258419
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    |||||||| ||||||  |||||||||||||||| ||||| |||||||||||||  ||||  | | | || ||||| ||||||| ||||||| | | ||||    
T  7258295 ctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttatcactttagtccctgacgtt 7258394  T
Q  475 aaaaacttttgttaactgatgatgt 499  Q
    |||||  | |||||| |||||||||    
T  7258395 aaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 499
Target Start/End: Complemental strand, 24288953 - 24288845
Alignment:
Q  391 ctgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaac 490  Q
    |||||||| || || || ||||| |||||| |||||| |||||||| |||||| |||||| |||||| |||| || | ||||||| | | || |||||||    
T  24288953 ctgtcacaaagatctctaactcaggattaattacaaagtagtccttgaatgtgcacttccattatcactttattctctggcgttatataattctgttaac 24288854  T
Q  491 tgatgatgt 499  Q
    |||||||||    
T  24288853 tgatgatgt 24288845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 499
Target Start/End: Original strand, 42477402 - 42477524
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    ||||||||||||||  |||| |||||||| |||||||| |||||||||||||  ||||| | | | || ||||||||||||| |||| || | | |||||    
T  42477402 tgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagtcc-tgactctgcacttccgttatcattttaatccctgacgtta 42477500  T
Q  476 aaaacttttgttaactgatgatgt 499  Q
    ||||  | |||||| |||||||||    
T  42477501 aaaaaatatgttaagtgatgatgt 42477524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 8048889 - 8048835
Alignment:
Q  373 ctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||||| ||| |||| ||||| |||||||| |||||||||||||    
T  8048889 ctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaa 8048835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 496
Target Start/End: Original strand, 22621154 - 22621268
Alignment:
Q  382 tgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaact 481  Q
    ||||||||  ||||| | |||||| | ||| | ||||||||| ||| |||||| | |||||| ||||| ||||||||| |||||   | |||||||||||    
T  22621154 tgcacctctatgtcataaaggtccataacttaagattaaatataaagtagtccctgaatgtgcacttctgttatcagtctagtctatgtcgttaaaaact 22621253  T
Q  482 tttgttaactgatga 496  Q
    | |||||||||||||    
T  22621254 tctgttaactgatga 22621268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 44334552 - 44334462
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||| |||||| ||| |||| |||||||||||||||||||||||||||| |||  ||||| | | | || |||||| |||||| |||||||    
T  44334552 ctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttccattatcactttagtc 44334462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 496
Target Start/End: Complemental strand, 8879665 - 8879525
Alignment:
Q  357 aaatgattaatttagtctctgactctgcacctcactgtcacatagg-tccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttat 455  Q
    ||||||| | ||| ||| ||||||||||||||  |||||| | | | | ||||||||| ||||||||||||| |||| | | |||||| | ||| |||||    
T  8879665 aaatgatcagtttggtccctgactctgcacctagctgtcataaaagcttcctgactcaggattaaatacaaagtagttcctgaatgtgcatttctgttat 8879566  T
Q  456 cagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    || ||||||| | | ||||||| | ||||||||||| ||||    
T  8879565 cactttagtccctgacgttaaataattttgttaactaatga 8879525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 34704921 - 34704981
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||| |||||||||||||  ||||||| ||| | |||||||| |||||||||||||    
T  34704921 tttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaa 34704981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 39708115 - 39708175
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||||| ||||| | |||||| |||||| ||||||| |||| ||||||||    
T  39708115 tttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaa 39708175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 425
Target Start/End: Original strand, 21062829 - 21062887
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaataca 425  Q
    ||||||| |||||| |||||||| |||||| | |||||| ||||||| |||||||||||    
T  21062829 tttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaataca 21062887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 24844737 - 24844807
Alignment:
Q  419 aaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaa 489  Q
    ||||||||| ||||| ||||||||  |||||| |||||||||||||| | |  ||||||||||| ||||||    
T  24844737 aaatacaaagtagtctttaaatgtacacttccattatcagtttagtccctgatgttaaaaacttctgttaa 24844807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 465
Target Start/End: Complemental strand, 34889010 - 34888936
Alignment:
Q  391 ctgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||||| ||||| || ||||||||||||||| |||   |||||||| | || ||||||||||||| |||||||    
T  34889010 ctgtcacaaaggtctctcactcatgattaaatataaagatgtccttaactctgcacttccgttatcactttagtc 34888936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 48647527 - 48647494
Alignment:
Q  394 tcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||||||||||||||| |||||||||||||    
T  48647527 tcacataggtccctgactcaggattaaatacaaa 48647494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 499
Target Start/End: Complemental strand, 7259771 - 7259663
Alignment:
Q  391 ctgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaac 490  Q
    ||||||||| |||| |||| ||| |||||||||||||  ||||| | | | |  ||||||||||||| ||||||| | | |||||||||  | ||||||     
T  7259771 ctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacacttccgttatcactttagtccctgacgttaaaaaaatctgttaag 7259672  T
Q  491 tgatgatgt 499  Q
    |||||||||    
T  7259671 tgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 30925111 - 30925059
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||| |||||| ||| | ||||||||||||| ||||||| |||||||||||||    
T  30925111 ctgattctgcagctcccagtcacataggtccttgactcaggattaaatacaaa 30925059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 44529068 - 44529100
Alignment:
Q  395 cacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||| |||||||||||||||||||||||||    
T  44529068 cacatagatccctgactcatgattaaatacaaa 44529100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 46286515 - 46286575
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||| |||||||| || ||| |||| | | |||||||||||||| |||||||||||||    
T  46286515 tttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaa 46286575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 367 - 499
Target Start/End: Complemental strand, 32898556 - 32898424
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||  ||||| | | | || ||||||||||||| |||||||     
T  32898556 tttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 32898457  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | | |||||||||  | |||||| |||||||||    
T  32898456 ctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 407 - 499
Target Start/End: Original strand, 28524810 - 28524902
Alignment:
Q  407 tgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    ||||||| ||||||||||||| || ||||| |||||| ||||||||||||| ||||||| | | ||||||| | |||||||||||||||||||    
T  28524810 tgactcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgt 28524902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 499
Target Start/End: Complemental strand, 10407695 - 10407563
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    |||||||||||| |||||| ||||||||||||||||||  ||||| | ||||||| |||||  ||||| ||| | || ||||||||||||| ||||||      
T  10407695 tttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtccataactttgcacttccgttatcactttagttc 10407596  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | | |||||||||  | |||||| |||||||||    
T  10407595 ctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 482
Target Start/End: Original strand, 8569429 - 8569535
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    ||||||| |||||| || ||||| |||||  ||||||||||||||||||||| ||||   | |||||| |||| |||||||||||||||| | | |||||    
T  8569429 tgactcttcacctcgctctcacaaaggtctttgactcatgattaaatacaaagtagtttatgaatgtgcactttcgttatcagtttagtccctgacgtta 8569528  T
Q  476 aaaactt 482  Q
    |||||||    
T  8569529 aaaactt 8569535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 354 - 496
Target Start/End: Complemental strand, 31075413 - 31075272
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||| | ||||| |||||||||||||||||||  ||| ||| |||| | || ||||  |||||||||||| |||||| | ||| |||||| |||||    
T  31075413 agtaaatggtcaatttggtctctgactctgcacctcgttgttacaaaggttcttggctcagcattaaatacaaaatagtcc-tgaatatgtactcccgtt 31075315  T
Q  454 atcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    |||| ||||||||| | ||||||| | || | |||||||||||    
T  31075314 atcactttagtcactgacgttaaataattatattaactgatga 31075272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 499
Target Start/End: Original strand, 35177405 - 35177539
Alignment:
Q  365 aatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagt 464  Q
    ||||||||| || | |||||| ||| ||||||||||||||||||||||  |||||||||||||  ||||| | | | || ||||||||||||| ||||||    
T  35177405 aatttagtccctaattctgcagctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatcactttagt 35177504  T
Q  465 caccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | | | ||||||||   | |||||| |||||||||    
T  35177505 ccctgacgttaaaataatctgttaagtgatgatgt 35177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 479
Target Start/End: Complemental strand, 35178907 - 35178803
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    |||||||||||| || |||||| || ||||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| ||||||| | | ||||    
T  35178907 ctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgttatcactttagtccctgacgtt 35178808  T
Q  475 aaaaa 479  Q
    |||||    
T  35178807 aaaaa 35178803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 465
Target Start/End: Original strand, 24198933 - 24199044
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||||| | ||| |||||||| ||| || ||| |||||||| |||||  ||| ||| ||||||||||||| || || || |||||| |||||||||    
T  24198933 agtaaatgatcatttttgtctctgattctacatctcgctgtcacaaaggtctttgattcaggattaaatacaaagtaatcattgaatgtgcacttccgtt 24199032  T
Q  454 atcagtttagtc 465  Q
    |||| |||||||    
T  24199033 atcactttagtc 24199044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 497
Target Start/End: Complemental strand, 28006718 - 28006576
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||||||| |||  ||||||||||||||| ||  |||  || |||| ||||| |||  |||||||| ||| |||||||| ||||||||||||||||    
T  28006718 agtaaatgatta-tttgttctctgactctgcacttcgatgttgcaaaggttcctgaatcagaattaaatataaagtagtccttgaatgtgtacttccgtt 28006620  T
Q  454 atcagtttagtcaccggcgttaaaaacttttgttaactgatgat 497  Q
    |||| ||||  | | | ||||||| | || ||||||||||||||    
T  28006619 atcactttaacccctgacgttaaataattctgttaactgatgat 28006576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 497
Target Start/End: Complemental strand, 28064021 - 28063879
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||||||| |||  ||||||||||||||| ||  |||  || |||| ||||| |||  |||||||| ||| |||||||| ||||||||||||||||    
T  28064021 agtaaatgatta-tttgttctctgactctgcacttcgatgttgcaaaggttcctgaatcagaattaaatataaagtagtccttgaatgtgtacttccgtt 28063923  T
Q  454 atcagtttagtcaccggcgttaaaaacttttgttaactgatgat 497  Q
    |||| ||||  | | | ||||||| | || ||||||||||||||    
T  28063922 atcactttaacccctgacgttaaataattctgttaactgatgat 28063879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 499
Target Start/End: Original strand, 31073993 - 31074138
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||| ||| |||| || ||||||||||| ||  |||||||| | ||| |||||||  |||||||| |||| ||||   | |||||| ||||| |||    
T  31073993 agtaaatggttactttaatccctgactctgcatcttgctgtcacaaaagtctctgactctggattaaatgcaaagtagtttctgaatgtgcacttctgtt 31074092  T
Q  454 atcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    |||| ||||||| | ||  ||||| | |||||||||||||||||||    
T  31074093 atcactttagtctctggaattaaataattttgttaactgatgatgt 31074138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 434
Target Start/End: Original strand, 41754010 - 41754077
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtcc 434  Q
    ||||||| |||  |||||||||  ||||||||||||||||||||||| ||||||||| |||| |||||    
T  41754010 tttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtcc 41754077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 499
Target Start/End: Original strand, 28619028 - 28619133
Alignment:
Q  394 tcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactga 493  Q
    ||||| ||||||||||| ||||||||||||||||  | || || | | || |||| |||||||| ||||||| | | ||||||| | ||||||||| |||    
T  28619028 tcacaaaggtccctgacccatgattaaatacaaagaaatcattgactctgcactttcgttatcactttagtctcggccgttaaataattttgttaagtga 28619127  T
Q  494 tgatgt 499  Q
    ||||||    
T  28619128 tgatgt 28619133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 30134589 - 30134638
Alignment:
Q  378 actctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||||||| |||||||| |||||||  |||||||||||||||||||    
T  30134589 actctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaa 30134638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 41754898 - 41754845
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaac 428  Q
    |||| |||||||||| ||||||||||| || |||||||| ||||||||||||||    
T  41754898 ctgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaac 41754845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 499
Target Start/End: Complemental strand, 5738105 - 5738002
Alignment:
Q  396 acataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatg 495  Q
    |||||||||| ||||||| |||||||||||||  |||  || | | |||||||||||||||| || ||||   ||||||||| | || |||||| |||||    
T  5738105 acataggtccatgactcaagattaaatacaaagaagttattgactctgtacttccgttatcacttcagtctttggcgttaaataattctgttaagtgatg 5738006  T
Q  496 atgt 499  Q
    ||||    
T  5738005 atgt 5738002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 465
Target Start/End: Complemental strand, 5965550 - 5965455
Alignment:
Q  370 agtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    ||||||||| | | ||||||  ||||||| | |||||||||||| |||||||||||||  |||| || | | || ||||||||||||| |||||||    
T  5965550 agtctctgattttacacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttagtc 5965455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 465
Target Start/End: Complemental strand, 12637836 - 12637771
Alignment:
Q  400 aggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||||| ||||| |||| |||||||| |||| | | |||||| ||||||||||||| |||||||    
T  12637836 aggtccctaactcaggattgaatacaaagtagttcctgaatgtgcacttccgttatcactttagtc 12637771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 43190929 - 43191021
Alignment:
Q  401 ggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactga 493  Q
    |||||||  |||| ||||||||||||| |||||  |  || ||||| || ||||||| ||||||| | | |||||||| ||||||||||||||    
T  43190929 ggtccctcgctcaagattaaatacaaaatagtctctgtatatgtacatctgttatcaatttagtctctgacgttaaaatcttttgttaactga 43191021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 375 - 496
Target Start/End: Original strand, 38853775 - 38853896
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    |||||||| ||| ||| ||||| | ||||| |||||||| ||||||||||||| |||||| |||||||| ||||||||||||| ||||||||| | ||||    
T  38853775 ctgactctacacttcattgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgtt 38853874  T
Q  475 aaaaacttttgttaactgatga 496  Q
    ||| | || |||||||| ||||    
T  38853875 aaataattatgttaactcatga 38853896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 31091630 - 31091506
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| ||||||| | | ||||    
T  31091630 ctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtctctgacgtt 31091531  T
Q  475 aaaaacttttgttaactgatgatgt 499  Q
    |||||  | |||||| |||||||||    
T  31091530 aaaaaaatatgttaagtgatgatgt 31091506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 499
Target Start/End: Complemental strand, 15442077 - 15441950
Alignment:
Q  372 tctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggc 471  Q
    ||||||||||||  |||| |||||||| || | ||||||||| ||||||||||||| |||||||| |||||| ||||   |||||| ||||||| |  |     
T  15442077 tctctgactctgttcctcgctgtcacaaagattcctgactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagt 15441978  T
Q  472 gttaaaaacttttgttaactgatgatgt 499  Q
    |||||| | |||||||||||||||||||    
T  15441977 gttaaataattttgttaactgatgatgt 15441950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 32766342 - 32766252
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||||||||||||  |||||||||||||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| |||||||    
T  32766342 ctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtc 32766252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 496
Target Start/End: Original strand, 37607149 - 37607243
Alignment:
Q  402 gtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    |||||| ||||||||||||||||||  |||||||| |||||| ||||||||||||| ||||||| | | ||||| | | || |||||||||||||    
T  37607149 gtccctaactcatgattaaatacaaggtagtcctttaatgtgcacttccgttatcactttagtccctgacgttatataattatgttaactgatga 37607243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 465
Target Start/End: Complemental strand, 34582780 - 34582683
Alignment:
Q  368 ttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||| ||||||||||||||  |||| ||| |||||  ||||||  ||||||||||||| |||||| | |||||| ||||||||||||| |||||||    
T  34582780 ttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtc 34582683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 466
Target Start/End: Original strand, 8420012 - 8420124
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||| | | ||| ||| |||||||||||  || | |||||| | |||||||| ||| ||||||||||||| |||||| | |||||| ||||| |||    
T  8420012 agtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctgtt 8420111  T
Q  454 atcagtttagtca 466  Q
    |||||||||||||    
T  8420112 atcagtttagtca 8420124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 17330341 - 17330281
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||  ||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  17330341 tttagtccttgattctgcagctcactgtcacataggtccctgactcaggattaaatacaaa 17330281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 492
Target Start/End: Complemental strand, 31443368 - 31443231
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||| | | ||||||||||||||||||| |||  ||||||| | |||  ||||| || |||||||||||| |||||| | || ||| ||||  |||    
T  31443368 agtaaatggtcactttagtctctgactctgcatctcgttgtcacaaaagtcattgacttataattaaatacaaagtagtccctgaa-gtgcacttatgtt 31443270  T
Q  454 atcagtttagtcaccggcgttaaaaacttttgttaactg 492  Q
    ||||||||||||   | | ||||||||||||||||||||    
T  31443269 atcagtttagtctttgactttaaaaacttttgttaactg 31443231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 496
Target Start/End: Original strand, 10728922 - 10729044
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagt---ccttaaatgtgtacttccgttatcagtttagtcaccggcg 472  Q
    ||||||| ||||||  ||||||| |||||| |||| |||||||||||| ||| ||||   | ||  ||||| ||||||||||||||||||| | | | ||    
T  10728922 tgactctacacctcggtgtcacaaaggtcc-tgacgcatgattaaatataaagtagtagtcattggatgtgcacttccgttatcagtttagcccctgacg 10729020  T
Q  473 ttaaaaacttttgttaactgatga 496  Q
    |||||||||| |||||||||||||    
T  10729021 ttaaaaacttatgttaactgatga 10729044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 24459549 - 24459497
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||    
T  24459549 ctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaa 24459497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 499
Target Start/End: Complemental strand, 17466930 - 17466807
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    |||||||||||||| |||||||||| | | |||||||| |||||||||||||  ||||  | | | || ||||||||||||| |||||||   | |||||    
T  17466930 tgactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtctaagacgtta 17466831  T
Q  476 aaaacttttgttaactgatgatgt 499  Q
    || | || |||||| |||||||||    
T  17466830 aataattctgttaagtgatgatgt 17466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 477
Target Start/End: Complemental strand, 26586367 - 26586296
Alignment:
Q  406 ctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaa 477  Q
    |||||||| ||||||||| ||| ||||| || |||||| ||||||||||||| ||||||| | |||||||||    
T  26586367 ctgactcaagattaaatataaagtagtctttgaatgtgcacttccgttatcactttagtctctggcgttaaa 26586296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 365 - 496
Target Start/End: Original strand, 31090174 - 31090305
Alignment:
Q  365 aatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagt 464  Q
    ||||||||| |||| |||||| ||| ||||||||||||||| ||||||| ||||||||| |||  ||||  | | | || ||||||||||| | ||||||    
T  31090174 aatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgttatgattttagt 31090273  T
Q  465 caccggcgttaaaaacttttgttaactgatga 496  Q
    | | | |||||||||  | |||||| ||||||    
T  31090274 ccctgacgttaaaaaaatatgttaagtgatga 31090305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 463
Target Start/End: Original strand, 31442394 - 31442441
Alignment:
Q  416 attaaatacaaactagtccttaaatgtgtacttccgttatcagtttag 463  Q
    |||||||||||| |||||| |||||||| |||||||||||||||||||    
T  31442394 attaaatacaaagtagtccataaatgtgcacttccgttatcagtttag 31442441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 479
Target Start/End: Original strand, 14704048 - 14704130
Alignment:
Q  397 cataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaa 479  Q
    ||||||||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| ||||||| | | |||||||||    
T  14704048 cataggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagtccctgacgttaaaaa 14704130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 499
Target Start/End: Original strand, 18675122 - 18675228
Alignment:
Q  393 gtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactg 492  Q
    ||||||||||||  |||||||  |||||||| ||| ||||||||  ||||| |||||| |||||| |||||||   ||||| ||| | ||||||||||||    
T  18675122 gtcacataggtcattgactcagaattaaatataaaatagtccttggatgtgcacttccattatcactttagtctttggcgtcaaataattttgttaactg 18675221  T
Q  493 atgatgt 499  Q
    || ||||    
T  18675222 ataatgt 18675228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 9616113 - 9616024
Alignment:
Q  400 aggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaa 489  Q
    |||| ||| |||||| |||||||||||| |||||| | |||| | |||| |||||||| ||||||| ||| ||||||||| || ||||||    
T  9616113 aggttcctaactcataattaaatacaaagtagtccctgaatgcgcactttcgttatcaatttagtctccgacgttaaaaatttctgttaa 9616024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 376 - 465
Target Start/End: Complemental strand, 12746303 - 12746214
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||||||||||| | |||  | |||| ||||||||| ||||||||||||| |||| | | ||||||  |||||||||||| |||||||    
T  12746303 tgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttccgttatcactttagtc 12746214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 499
Target Start/End: Complemental strand, 34037784 - 34037652
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    |||||||  |||||||||||||  |||||| | |||||| | ||||| |||||||||||||  ||||  | | | || ||||| ||||||| ||||||      
T  34037784 tttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatcactttagttc 34037685  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    ||| ||||||||| || |||||| |||||||||    
T  34037684 ccgccgttaaaaaattatgttaagtgatgatgt 34037652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 39015025 - 39015077
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||| ||| ||||||| ||| ||||||| |||||||||||||    
T  39015025 ctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaa 39015077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 499
Target Start/End: Complemental strand, 12005066 - 12004976
Alignment:
Q  409 actcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    ||||||||||||||| ||| |||||||| ||| || |||||| |||||||| ||||| |  || || ||||||| ||||| | ||||||||    
T  12005066 actcatgattaaatataaaatagtccttgaatatgcacttccattatcagtatagtctctagcattgaaaacttctgttagcggatgatgt 12004976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 427
Target Start/End: Original strand, 2910099 - 2910172
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||| || | |||||||| ||| | |||| ||| ||||||||||| ||||||||||  |||||||||||||    
T  2910099 agtaaataatcactttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaa 2910172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 492
Target Start/End: Original strand, 11985711 - 11985828
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    |||||||  |||||| |||| | | ||||| |||||||| ||||||||||||| |||||  | || ||| | || |||||||||||||||| |   ||||    
T  11985711 ctgactccacacctcgctgttataaaggtctctgactcaggattaaatacaaagtagtctctgaaggtgcattttcgttatcagtttagtccctaacgtt 11985810  T
Q  475 aaaaacttttgttaactg 492  Q
    |||| ||| |||||||||    
T  11985811 aaaagcttctgttaactg 11985828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 496
Target Start/End: Original strand, 33439261 - 33439382
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    |||||||||||| ||  ||||| | |||| | ||| ||||||||||||| ||| ||||| || |||||| || ||| |||||| ||||||  | | | ||    
T  33439261 ctgactctgcacatcgttgtcataaaggtacttgagtcatgattaaatataaagtagtcttttaatgtgcacctccattatcaatttagtttctgacatt 33439360  T
Q  475 aaaaacttttgttaactgatga 496  Q
    ||||| || |||||||||||||    
T  33439361 aaaaatttatgttaactgatga 33439382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 496
Target Start/End: Original strand, 38854841 - 38854930
Alignment:
Q  407 tgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    ||||||| ||||||||||||| |||| | |||||||| ||||  ||||||| ||||||||| |  |||||| | || |||||||| ||||    
T  38854841 tgactcaggattaaatacaaagtagttcctaaatgtgcacttatgttatcaatttagtcactgaagttaaataattatgttaactcatga 38854930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 433
Target Start/End: Complemental strand, 8421041 - 8420966
Alignment:
Q  357 aaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtc 433  Q
    ||||||| ||||| |||  |||||| ||| |||||||||||| |||||  ||||||| ||||||||||||| |||||    
T  8421041 aaatgatcaatttggtccatgactc-gcatctcactgtcacaaaggtcattgactcaggattaaatacaaagtagtc 8420966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 24458072 - 24458132
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||| |||| | |||| ||| || ||||||||||||||||||||  ||||||||||||    
T  24458072 tttagtccctgattatgcagctcgctatcacataggtccctgactcaaaattaaatacaaa 24458132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 367 - 479
Target Start/End: Original strand, 32764950 - 32765062
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| |||| |||||| ||   ||||| ||||||| |||||||| |||||||||||||  ||||| | | | || ||||||||||||| |||| ||     
T  32764950 tttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttaatcc 32765049  T
Q  467 ccggcgttaaaaa 479  Q
    | | |||||||||    
T  32765050 ctgacgttaaaaa 32765062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 40000437 - 40000385
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||| |||| |||||| ||||||| | | |||||||||||||    
T  40000437 ctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaa 40000385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 2464681 - 2464813
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| |||| |||||| ||| |||||| |||||||| |||||||||||||||||||||  ||||| ||| | || |||| |||||||| |||||||     
T  2464681 tttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcacttacgttatcactttagtct 2464780  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | | |||||||||  |||||||| |||||||||    
T  2464781 ctgacgttaaaaaaatttgttaagtgatgatgt 2464813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 497
Target Start/End: Complemental strand, 546132 - 546017
Alignment:
Q  382 tgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaact 481  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||| |  ||||||| | | || ||||||||||||| ||||||| | | |||||||||      
T  546132 tgcagctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatcactttagtccctgacgttaaaaaaa 546033  T
Q  482 tttgttaactgatgat 497  Q
    |||||||| |||||||    
T  546032 tttgttaagtgatgat 546017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 18400189 - 18400258
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaata 423  Q
    |||||||| | | ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  18400189 agtaaatggtcactttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaata 18400258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 499
Target Start/End: Original strand, 25590450 - 25590574
Alignment:
Q  374 tctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgt 473  Q
    |||||||||||||||| ||||||||||||||||||||||  |||||||||||||  ||||  | | | || ||||| ||||||| |||| || | | |||    
T  25590450 tctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctgattctgcacttctgttatcactttaatctctgacgt 25590548  T
Q  474 taaaaacttttgttaactgatgatgt 499  Q
    |||||| ||||||||| |||||||||    
T  25590549 taaaaaattttgttaagtgatgatgt 25590574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 375 - 499
Target Start/End: Complemental strand, 28591217 - 28591092
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||  | ||| | | | || |||||| |||||| ||||||| ||| ||||    
T  28591217 ctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctttatcactttagtccccgacgtt 28591118  T
Q  475 a-aaaacttttgttaactgatgatgt 499  Q
    | ||||  | |||||| |||||||||    
T  28591117 acaaaaaatctgttaagtgatgatgt 28591092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 378 - 499
Target Start/End: Original strand, 32640311 - 32640432
Alignment:
Q  378 actctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaa 477  Q
    ||||||||||||||||||||||||| || | ||||| |||||||||||||  ||||| ||| | |  ||||| ||||||| ||||||| | | |||||||    
T  32640311 actctgcacctcactgtcacataggaccataactcaggattaaatacaaataagtccctaactctaaacttctgttatcactttagtctctgacgttaaa 32640410  T
Q  478 aacttttgttaactgatgatgt 499  Q
    ||  |||||||| |||||||||    
T  32640411 aaaatttgttaagtgatgatgt 32640432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 21069301 - 21069433
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    |||||||||||||||||||||||  ||||||| ||||| |||||||| |||||||||||||  ||||||| | | || ||||| ||| ||| |||| |      
T  21069301 tttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcacttctgttttcactttaatat 21069400  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
      | ||||||||| ||||||||| |||||||||    
T  21069401 atgccgttaaaaaattttgttaagtgatgatgt 21069433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 490
Target Start/End: Complemental strand, 12445518 - 12445405
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    |||||||||||||| || | ||| ||||| |||| ||   |||||||| ||| ||||||| || |||| |||||||||||||  |||||| |||||||||    
T  12445518 tgactctgcacctcgctcttacaaaggtctctgattcggaattaaatataaagtagtcctgaa-tgtgcacttccgttatcaccttagtctccggcgtta 12445420  T
Q  476 aaaacttttgttaac 490  Q
    |||||||||||||||    
T  12445419 aaaacttttgttaac 12445405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 496
Target Start/End: Original strand, 19271397 - 19271483
Alignment:
Q  410 ctcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    |||||||||||||| ||| |||||||| |||||| |||||||||||||||||||||   | ||||||||| || |||||||| ||||    
T  19271397 ctcatgattaaatataaagtagtcctttaatgtgcacttccgttatcagtttagtccatgacgttaaaaatttatgttaactaatga 19271483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 496
Target Start/End: Original strand, 43099122 - 43099203
Alignment:
Q  415 gattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    ||||||||||||| ||||| ||  ||||||| | ||||||||||||||||| |   ||||||||||||||||||||||||||    
T  43099122 gattaaatacaaaatagtctttgcatgtgtagtaccgttatcagtttagtccctaacgttaaaaacttttgttaactgatga 43099203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 479
Target Start/End: Complemental strand, 2466881 - 2466773
Alignment:
Q  371 gtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccgg 470  Q
    ||||||||||||||||||| || |||||||||||  ||| ||| ||||||||| |||  ||||| ||| | || ||||||||||||| ||||||| | |     
T  2466881 gtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgttatcactttagtccctga 2466782  T
Q  471 cgttaaaaa 479  Q
    |||||||||    
T  2466781 cgttaaaaa 2466773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 499
Target Start/End: Original strand, 4592897 - 4593005
Alignment:
Q  391 ctgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaac 490  Q
    |||||||||| |||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| ||||||| | | |||||||||  | ||||||     
T  4592897 ctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaag 4592996  T
Q  491 tgatgatgt 499  Q
    |||||||||    
T  4592997 tgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 9538152 - 9538062
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    ||||||||||| |||  ||||| |||||||||||||||| |||||||||||||  ||||  | | |||| ||||||||||||| |||||||    
T  9538152 ctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttatcattttagtc 9538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 464
Target Start/End: Original strand, 8074463 - 8074560
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagt 464  Q
    ||||||| |||| | |||| ||| |||||||||| |||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| ||||||    
T  8074463 tttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagt 8074560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 9537035 - 9537166
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| || |||||||||||| |||||||||||||| |||||| |  ||||||||||||  ||| | | | |||| |||||| |||||| ||||||||    
T  9537035 tttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagt-catgactgtgcacttccattatcactttagtca 9537133  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | | ||||||| | || || ||| |||||||||    
T  9537134 ctgacgttaaataattatggtaagtgatgatgt 9537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 14891243 - 14891199
Alignment:
Q  378 actctgcacctcactgtcacataggtccctgactcatgattaaat 422  Q
    |||||||||||| |||||||||||||| |||||||||||||||||    
T  14891243 actctgcacctcgctgtcacataggtctctgactcatgattaaat 14891199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 16611749 - 16611800
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||| |||||| |||||||||||||| |||||||| |||||||||||||    
T  16611749 tgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaa 16611800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 19182971 - 19183022
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||| |||||||| |||||||||||||| |||||||| |||||||||||||    
T  19182971 tgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaa 19183022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 425
Target Start/End: Complemental strand, 40612770 - 40612712
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaataca 425  Q
    ||||||| |||| | |||| ||||||||||| ||||||||||||||| |||||||||||    
T  40612770 tttagtccctgattttgcagctcactgtcacgtaggtccctgactcaggattaaataca 40612712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 496
Target Start/End: Complemental strand, 26327175 - 26327054
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    |||||||||||||||  ||||| |  ||  ||||||||| ||||||||| ||| ||  ||||  ||||| |||||||| ||||||||||||   | ||||    
T  26327175 ctgactctgcacctcgttgtcataagggctcctgactcaggattaaatataaaataacccttggatgtgcacttccgtaatcagtttagtccttgacgtt 26327076  T
Q  475 aaaaacttttgttaactgatga 496  Q
    ||||| || |||||||||||||    
T  26327075 aaaaatttctgttaactgatga 26327054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 18004637 - 18004681
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcaca 398  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||||    
T  18004637 agtaaataattactttagtccctgactctgcacctcactgtcaca 18004681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 462
Target Start/End: Complemental strand, 35538373 - 35538317
Alignment:
Q  406 ctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagttta 462  Q
    ||||||| |||||||||||||| |||| ||| |||||| ||||||||||||| ||||    
T  35538373 ctgactcgtgattaaatacaaagtagttcttcaatgtgcacttccgttatcacttta 35538317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 13651207 - 13651173
Alignment:
Q  391 ctgtcacataggtccctgactcatgattaaataca 425  Q
    ||||||||||||||||||||||| |||||||||||    
T  13651207 ctgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 433
Target Start/End: Complemental strand, 19186319 - 19186265
Alignment:
Q  379 ctctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtc 433  Q
    ||||||| ||| | ||||||||||||||||||| | |||||||||||||| ||||    
T  19186319 ctctgcatctcccagtcacataggtccctgacttaggattaaatacaaacaagtc 19186265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 13483270 - 13483218
Alignment:
Q  368 ttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaa 420  Q
    ||||||| |||||||||||||| ||| ||| ||||||  ||||||||||||||    
T  13483270 ttagtctttgactctgcacctcgctgccacgtaggtctttgactcatgattaa 13483218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 427
Target Start/End: Original strand, 28589739 - 28589771
Alignment:
Q  395 cacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||||||||||||||| ||||||||||||    
T  28589739 cacataggtccctgactcataattaaatacaaa 28589771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 367 - 499
Target Start/End: Complemental strand, 32665881 - 32665749
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| |||| |||||| ||| |||||||||||||| ||||||||||||||||||||||  |||| || | | || ||||||||||||| |||||||     
T  32665881 tttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttatcactttagtcc 32665782  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | ||||||| |||  | |||||| |||||||||    
T  32665781 ctggcgttacaaaaatctgttaagtgatgatgt 32665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 5782426 - 5782486
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  5782426 tttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaa 5782486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 376 - 496
Target Start/End: Complemental strand, 11060886 - 11060766
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    ||||| |||||||| |||||||| |||||| |||||||  |||||||||||| |||||| | |||| | |||| |||||||| ||||||| ||| |||||    
T  11060886 tgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgttatcactttagtccccgacgtta 11060787  T
Q  476 aaaacttttgttaactgatga 496  Q
    || | || |||||||||||||    
T  11060786 aataattctgttaactgatga 11060766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 496
Target Start/End: Complemental strand, 1001974 - 1001884
Alignment:
Q  406 ctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    ||||||||| |||||||| ||| |||||  | |||||||||||||||||||||||||||| |   ||||||||| ||||||||||||||||    
T  1001974 ctgactcataattaaataaaaattagtctatgaatgtgtacttccgttatcagtttagtctctaacgttaaaaaattttgttaactgatga 1001884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 375 - 479
Target Start/End: Complemental strand, 7945657 - 7945553
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtt 474  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||||||||||  ||||  | | | || ||||||||||||| ||||||| | | ||||    
T  7945657 ctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatcactttagtccctgacgtt 7945558  T
Q  475 aaaaa 479  Q
    |||||    
T  7945557 aaaaa 7945553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 499
Target Start/End: Original strand, 39725384 - 39725483
Alignment:
Q  400 aggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    |||| ||| ||||||||||||||||||| ||||  || ||| || ||||||||||| |||||||||   | ||||||||||||||||| |||||||||||    
T  39725384 aggttcctaactcatgattaaatacaaaatagttattgaatatgcacttccgttattagtttagtctttgacgttaaaaacttttgttgactgatgatgt 39725483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 497
Target Start/End: Original strand, 8975196 - 8975301
Alignment:
Q  392 tgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaact 491  Q
    ||||||| |||||||||||||| ||||||||| ||| |||||| | ||| || |||| |||||||| |||||||   ||||||||| | ||||||||| |    
T  8975196 tgtcacaaaggtccctgactcaagattaaatataaagtagtccatgaatatgcactttcgttatcactttagtctttggcgttaaataattttgttaatt 8975295  T
Q  492 gatgat 497  Q
    ||||||    
T  8975296 gatgat 8975301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 465
Target Start/End: Original strand, 1001153 - 1001264
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgtt 453  Q
    |||||||||| | |||||||  ||||| ||||||||  || |||| |||||| ||||||  ||||||||||||| |||||  | |||||| ||||| |||    
T  1001153 agtaaatgataactttagtccatgactttgcacctcgttgccacaaaggtccatgactcgggattaaatacaaagtagtctctgaatgtgcacttctgtt 1001252  T
Q  454 atcagtttagtc 465  Q
    ||||||||||||    
T  1001253 atcagtttagtc 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 499
Target Start/End: Complemental strand, 10333292 - 10333165
Alignment:
Q  372 tctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggc 471  Q
    ||||||| |||||| ||| |||| ||||||||| |||||||| |||||||||||||  ||||  | | | || ||||||||||||| ||||||| |  ||    
T  10333292 tctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagtctctagc 10333193  T
Q  472 gttaaaaacttttgttaactgatgatgt 499  Q
    ||||||||  | |||||| |||||||||    
T  10333192 gttaaaaaaatctgttaagtgatgatgt 10333165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 6612431 - 6612563
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| ||||||||||||||| |||| | | | ||| ||||||||||||||||||||||| ||||  | | | || |||||| |||||| |||| ||     
T  6612431 tttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttccattatcactttaatcc 6612530  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | | ||||||| | ||||||||| |||| ||||    
T  6612531 ctgacgttaaataattttgttaagtgattatgt 6612563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 465
Target Start/End: Original strand, 7944169 - 7944265
Alignment:
Q  369 tagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    ||||| |||| | |||| ||| |||||||||||||||||||||||  ||||||||||||  ||||||| | | || |||| |||||||| |||||||    
T  7944169 tagtccctgattttgcaactcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatcaatttagtc 7944265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 9339658 - 9339790
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| |||| |||||| |||  ||| |||||||||||||||||| |||||||||||||  | |||   | | || ||||||||||||| |||||||     
T  9339658 tttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgttatcactttagtcc 9339757  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | | |||||||||  | |||||| |||||||||    
T  9339758 ctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 496
Target Start/End: Original strand, 11829946 - 11830050
Alignment:
Q  392 tgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaact 491  Q
    ||||||| ||||| || ||||| ||||||||||||| ||||||||  || || | ||||||||| ||||||| |   | |||||||||||| ||||||||    
T  11829946 tgtcacaaaggtcactaactcaagattaaatacaaattagtccttgtatatgcatttccgttattagtttaggctttgacgttaaaaacttatgttaact 11830045  T
Q  492 gatga 496  Q
    |||||    
T  11830046 gatga 11830050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 499
Target Start/End: Original strand, 1407657 - 1407784
Alignment:
Q  372 tctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggc 471  Q
    |||||||||||||||||   ||||||| |||||| ||||| |||| |||||| ||| ||||   | ||| || ||||  ||||||| ||||||| | | |    
T  1407657 tctctgactctgcaccttgttgtcacaaaggtccatgacttatgactaaatataaagtagtttctgaatatgcacttatgttatcactttagtccctgac 1407756  T
Q  472 gttaaaaacttttgttaactgatgatgt 499  Q
    |||||| | |||||||||||||||||||    
T  1407757 gttaaataattttgttaactgatgatgt 1407784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 9341123 - 9341076
Alignment:
Q  380 tctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||| |||||| |||||||||||||||||||| |||||||||||||    
T  9341123 tctgcatctcactatcacataggtccctgactcaggattaaatacaaa 9341076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 465
Target Start/End: Original strand, 10332998 - 10333096
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    ||||||| |||||| ||||||||  |||||||||||||| ||| ||| ||||||||| |||  ||||| | | | || ||||||||||||| |||||||    
T  10332998 tttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccgttatcattttagtc 10333096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 496
Target Start/End: Original strand, 26518160 - 26518250
Alignment:
Q  406 ctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    |||||||| ||||||||||||| |||| | | |||||| | ||||||||||| ||||||| |  |||| |||||||| ||||||| |||||    
T  26518160 ctgactcaagattaaatacaaagtagttcatgaatgtgcagttccgttatcaatttagtctctagcgtaaaaaacttatgttaaccgatga 26518250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 496
Target Start/End: Complemental strand, 50107275 - 50107185
Alignment:
Q  406 ctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    |||| ||| ||||||||||||| |||||  | |||||| ||||||||||||| |||||||   ||||||||| | || |||||||||||||    
T  50107275 ctgattcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatga 50107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 22856692 - 22856824
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| ||||||||||||| |  ||| ||| || | | ||||||| |||||||||||||  ||||  ||| | || ||||||||||||| |||||||     
T  22856692 tttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctctaactctgcacttccgttatcactttagtct 22856791  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    ||| ||||||| | || |||||| |||| ||||    
T  22856792 ccgacgttaaataattatgttaagtgattatgt 22856824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 496
Target Start/End: Complemental strand, 26519180 - 26519084
Alignment:
Q  400 aggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    |||||||| ||||  | ||||||||||| ||||| || |||||| ||||  |||||||||||| || | |||||||||||||| ||| || ||||||    
T  26519180 aggtccctaactccgggttaaatacaaagtagtctttgaatgtgcacttttgttatcagtttaatctctggcgttaaaaacttatgtcaattgatga 26519084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 423
Target Start/End: Complemental strand, 52440666 - 52440614
Alignment:
Q  371 gtctctgactctgcacctcactgtcacataggtccctgactcatgattaaata 423  Q
    |||||||||| ||||| || ||||||||||||||||||| ||| |||||||||    
T  52440666 gtctctgactttgcacatcgctgtcacataggtccctgagtcaggattaaata 52440614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 5783205 - 5783110
Alignment:
Q  382 tgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaa 477  Q
    |||||||| ||||||||||| |||  ||||||  ||||||||||||  ||||| | | | || ||||||||||||| |||||||||  ||||||||    
T  5783205 tgcacctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcactttagtcactagcgttaaa 5783110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 534661 - 534600
Alignment:
Q  374 tctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtcct 435  Q
    |||| ||||||||||| |||| |||||||| | ||| ||| |||||||||||||| ||||||    
T  534661 tctggctctgcacctcgctgttacataggttcttgattcaggattaaatacaaacaagtcct 534600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 7528122 - 7528163
Alignment:
Q  59 gttataactaggagtgtgcatggttcataaaccaaaccaaac 100  Q
    |||||||||||| ||||||||| ||||| |||||||||||||    
T  7528122 gttataactaggggtgtgcatgattcatgaaccaaaccaaac 7528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 496
Target Start/End: Original strand, 15222337 - 15222393
Alignment:
Q  440 tgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    ||||| |||||||||||| ||||||| ||  |||||||||||| ||||| |||||||    
T  15222337 tgtgtgcttccgttatcaatttagtccccaacgttaaaaacttctgttagctgatga 15222393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 365 - 499
Target Start/End: Original strand, 79083 - 79217
Alignment:
Q  365 aatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagt 464  Q
    ||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||  ||||||| | | || || |||| ||||| ||||||    
T  79083 aatttagttcctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctccgatatcactttagt 79182  T
Q  465 caccggcgttaaaaacttttgttaactgatgatgt 499  Q
    |   | ||||||| | ||||||||| |||||||||    
T  79183 ctttgacgttaaataattttgttaagtgatgatgt 79217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 367 - 436
Target Start/End: Complemental strand, 74424 - 74355
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtcctt 436  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  74424 tttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtcctt 74355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 79786 - 79734
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||| |||||||  ||| ||||| || |||||||||||||||||||||||    
T  79786 ctgactcggcacctcgttgttacataagttcctgactcatgattaaatacaaa 79734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 367 - 479
Target Start/End: Original strand, 17700530 - 17700642
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    |||||||| ||||||||||||||  |||||||||||| ||||||||| |||||||||||||  ||||| | | | || ||||||||||||| |||||||     
T  17700530 tttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 17700629  T
Q  467 ccggcgttaaaaa 479  Q
    | | |||||||||    
T  17700630 ctgacgttaaaaa 17700642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 367 - 479
Target Start/End: Complemental strand, 17702030 - 17701918
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    |||||||||||| |||||| ||| |||||| |||||||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| |||||||     
T  17702030 tttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcactttagtcc 17701931  T
Q  467 ccggcgttaaaaa 479  Q
    | | |||||||||    
T  17701930 ctgacgttaaaaa 17701918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 392 - 496
Target Start/End: Original strand, 39497244 - 39497348
Alignment:
Q  392 tgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaact 491  Q
    ||||||| |||||| ||||||| ||||||||||||| ||||  || |||||| |||| ||||||||||||| || | | ||||||||||| |||||||||    
T  39497244 tgtcacaaaggtccatgactcaggattaaatacaaaatagttattgaatgtgcactttcgttatcagtttaatctctgtcgttaaaaactcttgttaact 39497343  T
Q  492 gatga 496  Q
    |||||    
T  39497344 gatga 39497348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 52316991 - 52317123
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    |||||||||||| |||||| ||| |||||| ||||||| ||||||||||||||||||||||  |||| |||| | || || |||||||||| |||||||     
T  52316991 tttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccgttatcattttagtcc 52317090  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
      | |||||||||  | |||||| |||||||||    
T  52317091 atgacgttaaaaaaatctgttaagtgatgatgt 52317123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 465
Target Start/End: Original strand, 19114535 - 19114643
Alignment:
Q  357 aaatgattaatttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatc 456  Q
    ||||||| | ||||||| |||||||||||| ||  ||||||| |||||||||||||| |||||||||||||  ||||  ||| | || ||||||||||||    
T  19114535 aaatgatcactttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatc 19114634  T
Q  457 agtttagtc 465  Q
    | |||||||    
T  19114635 actttagtc 19114643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 499
Target Start/End: Complemental strand, 53959187 - 53959079
Alignment:
Q  391 ctgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaac 490  Q
    |||||||||||||| ||||||||||||||||||||||  ||| | | | | || ||||||||||||| ||||||| | | |||||||||  ||||||||     
T  53959187 ctgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttagtctctgacgttaaaaaaatttgttaag 53959088  T
Q  491 tgatgatgt 499  Q
    |||||||||    
T  53959087 tgatgatgt 53959079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 354 - 496
Target Start/End: Original strand, 40205880 - 40206023
Alignment:
Q  354 agtaaatgattaatttagtctctgactctgcacctcactgtcacataggtccct-gactcatgattaaatacaaactagtccttaaatgtgtacttccgt 452  Q
    |||||||| | | ||||||| | ||||||| | ||| |||||| | ||||| || |||||| ||||||| ||||| |||||  | |||||| ||||||||    
T  40205880 agtaaatggtcattttagtcccggactctgtagctcgctgtcataaaggtctcttgactcacgattaaaaacaaagtagtctctgaatgtgcacttccgt 40205979  T
Q  453 tatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    ||||||||||||||  ||||||||||| || |||||||| ||||    
T  40205980 tatcagtttagtcattggcgttaaaaaattatgttaactaatga 40206023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 40207049 - 40206951
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||| ||||||||||||| ||  | ||||| || ||| |||||||||||||| || ||| |||||||| |||||| | |||||||||||||||||||    
T  40207049 tttagtatctgactctgcacatcgttatcacaaagttccttgactcatgattaagtataaattagtccttgaatgtgcatttccgttatcagtttagtc 40206951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 19331128 - 19331180
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  19331128 ctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaa 19331180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 20464081 - 20464213
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| | |||||||||||||  ||||||| ||||||||| ||||||||||||||||||  ||||| | | | || ||||| ||||||| |||||||     
T  20464081 tttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcactttagtcc 20464180  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
     || ||||||| |  | |||||| |||||||||    
T  20464181 acgacgttaaataactctgttaagtgatgatgt 20464213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 427
Target Start/End: Complemental strand, 52318424 - 52318368
Alignment:
Q  371 gtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||    
T  52318424 gtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaa 52318368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 367 - 433
Target Start/End: Original strand, 2591639 - 2591705
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtc 433  Q
    ||||||| |||| |||||| ||  ||||||||||||||||||||||| |||||||||||||| ||||    
T  2591639 tttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtc 2591705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 2592118 - 2592020
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    ||||||| || | |||||| ||| ||||||||||||||||||||||| |||||||||||||  ||||| | | |   |||||||||||||| |||||||    
T  2592118 tttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgttatcactttagtc 2592020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 33428538 - 33428448
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||||||||||||  ||||||||||||||||||||||  ||||||||||||  ||||||| | | || | ||||||| ||| |||||||    
T  33428538 ctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgtcactttagtc 33428448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 45601049 - 45600952
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    ||||||| |||||||||  |||| ||||||||||||||||||| ||| |||||||||||||  ||||| | | | || ||||||||||||| |||||||    
T  45601049 tttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagtcc-tgactctgcacttccgttatcactttagtc 45600952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 48573005 - 48573057
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||||||||||  | |||||||||||||||||||| |||||||||||||    
T  48573005 ctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaa 48573057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 499
Target Start/End: Original strand, 55388085 - 55388217
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| |||| |||||| ||| |||||| ||||||| |||||||| |||||||||||||  |||   | | | || ||| ||||||||| |||||||     
T  55388085 tttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccgttatcactttagtcc 55388184  T
Q  467 ccggcgttaaaaacttttgttaactgatgatgt 499  Q
    | | |||||||||  |||||||| |||||||||    
T  55388185 ctgacgttaaaaaaatttgttaagtgatgatgt 55388217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 499
Target Start/End: Original strand, 36278989 - 36279096
Alignment:
Q  392 tgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaact 491  Q
    |||||||||||||||||| ||| |||||||||||||  ||||  | | | || ||||||||||||| ||||||| | | ||||||||| || | |||| |    
T  36278989 tgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttatcattttagtccctgacgttaaaaaattcttttaagt 36279088  T
Q  492 gatgatgt 499  Q
    ||||||||    
T  36279089 gatgatgt 36279096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 476
Target Start/End: Complemental strand, 11773138 - 11773053
Alignment:
Q  391 ctgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaa 476  Q
    ||||||||||||||||||||||| |||||||||||||  ||||  | | | |  ||||||||||||| ||||||| | ||||||||    
T  11773138 ctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttagtccctggcgttaa 11773053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 464
Target Start/End: Original strand, 26106985 - 26107065
Alignment:
Q  384 cacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagt 464  Q
    ||||||| ||||| | || ||||| |||||||| |||||| ||| ||||| || |||||| |||||| |||||||||||||    
T  26106985 cacctcattgtcataaagttccctaactcatgaataaatataaaatagtctttgaatgtgcacttccattatcagtttagt 26107065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 34263825 - 34263877
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||| |||||||| |||||| ||| ||| |||||||||||||    
T  34263825 ctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaa 34263877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 499
Target Start/End: Complemental strand, 40318786 - 40318694
Alignment:
Q  407 tgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatgatgt 499  Q
    |||||||  |||||||||||| ||||  ||||||||| | ||||||||||| ||||||| | |  || |||||||| |||||| |||||||||    
T  40318786 tgactcagaattaaatacaaagtagtttttaaatgtgcatttccgttatcaatttagtccctgatgtaaaaaacttatgttaattgatgatgt 40318694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 19115248 - 19115197
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||  |||||||||||||| | ||||| |||||||||||||    
T  19115248 tgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaa 19115197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 30360526 - 30360447
Alignment:
Q  417 ttaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    ||||||| ||| |||||  |||||||| | ||||||||| | |||||||   ||||||||||| ||||||||||||||||    
T  30360526 ttaaatataaagtagtctctaaatgtgcatttccgttattaatttagtctttggcgttaaaaatttttgttaactgatga 30360447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 47075453 - 47075402
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||  |||||||||||||| | ||||| |||||||||||||    
T  47075453 tgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaa 47075402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 427
Target Start/End: Complemental strand, 49261620 - 49261585
Alignment:
Q  392 tgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||||||||||||||||| |||||||||||||    
T  49261620 tgtcacataggtccctgactcaggattaaatacaaa 49261585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 26652707 - 26652617
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||| |||| ||| ||||||| |  |||||||||| | ||| ||||||||| |||||| | ||||||||  || |||||||||||||||    
T  26652707 ctgactttgcatctcgctgtcactttagtccctgacttaggataaaatacaaaatagtccatgaatgtgtatctctgttatcagtttagtc 26652617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 489
Target Start/End: Complemental strand, 47118162 - 47118040
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtca 466  Q
    ||||||| |||||||||||||||  ||||| ||| ||||| |||||| |||||||| ||||  ||||  | | | || |||| |||||||| |||||||     
T  47118162 tttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgttatcactttagtcc 47118063  T
Q  467 ccggcgttaaaaacttttgttaa 489  Q
    | | ||||||| | |||||||||    
T  47118062 ctgacgttaaataattttgttaa 47118040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 47428660 - 47428614
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaa 421  Q
    |||||| |||||||| ||||||||||||||| ||||||| |||||||    
T  47428660 ctgactttgcacctctctgtcacataggtccgtgactcaagattaaa 47428614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 499
Target Start/End: Complemental strand, 36280401 - 36280296
Alignment:
Q  394 tcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactga 493  Q
    ||||||||||| |||||||| ||||||||| |||  ||||  | | | || ||||||||||||| ||||||| | | |||||||||  | |||||| |||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatatgttaagtga 36280302  T
Q  494 tgatgt 499  Q
    ||||||    
T  36280301 tgatgt 36280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 47427887 - 47427932
Alignment:
Q  382 tgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||||||| ||||||||||||||| |||||||  ||||||||||||    
T  47427887 tgcacctcgctgtcacataggtccttgactcaaaattaaatacaaa 47427932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 50753841 - 50753890
Alignment:
Q  379 ctctgcacctcactgtcacataggtccctgactcatgattaaatacaaac 428  Q
    ||||||||||| ||||||||||||||||| | ||| ||||||||| ||||    
T  50753841 ctctgcacctcgctgtcacataggtccctaattcaggattaaatataaac 50753890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 465
Target Start/End: Original strand, 48808380 - 48808476
Alignment:
Q  369 tagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    ||||| |||| |||||| ||| |||| | ||||||| |||||||| |||||||||||||  ||| | ||| | || ||||||||| ||| |||||||    
T  48808380 tagtccctgattctgcagctcgctgttagataggtctctgactcaggattaaatacaaataagttcctaactctgcacttccgttgtcactttagtc 48808476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 55389569 - 55389521
Alignment:
Q  378 actctgcacctcactgtcacataggtccctgactcatgattaaatacaa 426  Q
    |||||||||||| ||||||||||||||  |||||||  |||||||||||    
T  55389569 actctgcacctcgctgtcacataggtcattgactcaaaattaaatacaa 55389521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 1707 - 1825
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    |||||| | ||||| |||||||| | ||| || ||||  || |||||||||| ||||||| ||| ||| ||||| ||||||||||||||| | |||||||    
T  1707 tgactcagaacctcgctgtcacaaaagtctctaactcgggaataaatacaaagtagtcct-aaacgtgcacttctgttatcagtttagtctctggcgtta 1805  T
Q  476 aaaacttttgttaactgatg 495  Q
    |||||||||||||| |||||    
T  1806 aaaacttttgttaattgatg 1825  T

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Target: scaffold0237; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 3009 - 3086
Alignment:
Q  417 ttaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatg 495  Q
    ||||||||||| ||||||| ||| ||| | ||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  3009 ttaaatacaaagtagtcct-aaacgtgcatttccgttatcagtttagtctctggcgttaaaaacttttgttaattgatg 3086  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 489
Target Start/End: Complemental strand, 12676574 - 12676459
Alignment:
Q  374 tctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgt 473  Q
    ||||||||||||||||  |||||||  |||| ||| |||| ||||||||||||| |||||  |||||||| ||||  ||||||||||||||| | ||| |    
T  12676574 tctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgttatcagtttagtctctggcat 12676475  T
Q  474 taaaaacttttgttaa 489  Q
    |||||| || ||||||    
T  12676474 taaaaatttatgttaa 12676459  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 495
Target Start/End: Original strand, 29845502 - 29845620
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgtta 475  Q
    |||||| | ||||| |||||||| | ||| || ||||  || |||||||||| ||||||| ||| ||| ||||| ||||||||||||||| | |||||||    
T  29845502 tgactcagaacctcgctgtcacaaaagtctctaactcgggaataaatacaaagtagtcct-aaacgtgcacttctgttatcagtttagtctctggcgtta 29845600  T
Q  476 aaaacttttgttaactgatg 495  Q
    |||||||||||||| |||||    
T  29845601 aaaacttttgttaattgatg 29845620  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 29856807 - 29856884
Alignment:
Q  417 ttaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatg 495  Q
    ||||||||||| ||||||| ||| ||| | ||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  29856807 ttaaatacaaagtagtcct-aaacgtgcatttccgttatcagtttagtctctggcgttaaaaacttttgttaattgatg 29856884  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 433
Target Start/End: Original strand, 30748011 - 30748077
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtc 433  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||| | |||||||||||||| ||||    
T  30748011 tttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtc 30748077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 427
Target Start/End: Original strand, 31218967 - 31219027
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    |||| |||||||||||||||||| ||||||||||||||| | ||||| |||||||||||||    
T  31218967 tttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaa 31219027  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 24621440 - 24621345
Alignment:
Q  400 aggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatg 495  Q
    ||||| |||||| ||||||||||||||| ||||  || ||| || ||||  ||||| ||||||||| | ||||||| |||||||||||||||||||    
T  24621440 aggtctctgactaatgattaaatacaaagtagtttttgaatttgcacttttgttattagtttagtctctggcgttacaaacttttgttaactgatg 24621345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 433
Target Start/End: Complemental strand, 6468883 - 6468826
Alignment:
Q  376 tgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtc 433  Q
    ||||||||||  || |||||||| |||||||||||||||||||||||||||| |||||    
T  6468883 tgactctgcatatcgctgtcacaaaggtccctgactcatgattaaatacaaaatagtc 6468826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 496
Target Start/End: Original strand, 24621122 - 24621218
Alignment:
Q  400 aggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaacttttgttaactgatga 496  Q
    |||||| |||||||||||||||||||||  | ||  |||||| |  |||||||||||||||||||||  | | |||||||||| | |||||||||||    
T  24621122 aggtccttgactcatgattaaatacaaagaaatctctaaatgcgcgcttccgttatcagtttagtcattgacattaaaaacttctattaactgatga 24621218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 23507961 - 23508021
Alignment:
Q  367 tttagtctctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaac 428  Q
    ||||||||||| |||| |||||| ||||||||||||| ||||| ||| ||||||||||||||    
T  23507961 tttagtctctg-ctctacacctccctgtcacataggttcctgattcaggattaaatacaaac 23508021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 496
Target Start/End: Original strand, 5265224 - 5265339
Alignment:
Q  380 tctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtcaccggcgttaaaaa 479  Q
    ||||||||||  ||| |||  |||| |||| ||| |||||||| |||| ||| | || |||||| ||||||||||||||||||||| | | |||||||||    
T  5265224 tctgcacctcgttgttacaatggtctctgattcaagattaaatgcaaattagcctttgaatgtgcacttccgttatcagtttagtc-ctgacgttaaaaa 5265322  T
Q  480 cttttgttaactgatga 496  Q
    | | |||||| ||||||    
T  5265323 catctgttaattgatga 5265339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 427
Target Start/End: Complemental strand, 31219263 - 31219211
Alignment:
Q  375 ctgactctgcacctcactgtcacataggtccctgactcatgattaaatacaaa 427  Q
    ||||||||||||||| ||||||||||||||  | ||||| |||||||||||||    
T  31219263 ctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaa 31219211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 465
Target Start/End: Original strand, 116080 - 116165
Alignment:
Q  380 tctgcacctcactgtcacataggtccctgactcatgattaaatacaaactagtccttaaatgtgtacttccgttatcagtttagtc 465  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||||||  ||||| | | | || ||||||||||||| |||||||    
T  116080 tctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatcactttagtc 116165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 21423 - 21452
Alignment:
Q  73 tgtgcatggttcataaaccaaaccaaacca 102  Q
    ||||||||||||||||||||||||||||||    
T  21423 tgtgcatggttcataaaccaaaccaaacca 21452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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