View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0730_low_8 (Length: 490)

Name: NF0730_low_8
Description: NF0730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0730_low_8
NF0730_low_8
[»] chr7 (10 HSPs)
chr7 (314-414)||(35073965-35074067)
chr7 (345-414)||(35100732-35100802)
chr7 (366-414)||(35085466-35085514)
chr7 (327-414)||(42795344-42795434)
chr7 (145-182)||(42795614-42795651)
chr7 (206-258)||(42795502-42795554)
chr7 (206-249)||(35085284-35085327)
chr7 (213-256)||(43026940-43026983)
chr7 (345-387)||(43026796-43026838)
chr7 (206-249)||(35100591-35100634)
[»] chr8 (1 HSPs)
chr8 (13-61)||(38874350-38874398)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 314 - 414
Target Start/End: Original strand, 35073965 - 35074067
Alignment:
Q  314 gatgaaaatcacatga-ttttacaaacataaataagtatcgcttggagagtagaagagatata-gagatacttgagaaaagcagcttatcgtacctgttt 411  Q
    |||||||||| ||||| ||||||||  || | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  35073965 gatgaaaatcgcatgaattttacaatgatgattaagtatcgcttggagagtagaagagagataagagatacttgagaaaagcagcttattgtacctgttt 35074064  T
Q  412 ctg 414  Q
    |||    
T  35074065 ctg 35074067  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 35100732 - 35100802
Alignment:
Q  345 taagtatcgcttggagagtagaagagatata-gagatacttgagaaaagcagcttatcgtacctgtttctg 414  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  35100732 taagtatcgcttggagagtagaagagagataagagatacttgagaaaagcagcttatcgtacctgtttctg 35100802  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 414
Target Start/End: Original strand, 35085466 - 35085514
Alignment:
Q  366 aagagatatagagatacttgagaaaagcagcttatcgtacctgtttctg 414  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35085466 aagagagatagagatacttgagaaaagcagcttatcgtacctgtttctg 35085514  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 414
Target Start/End: Complemental strand, 42795434 - 42795344
Alignment:
Q  327 tgattttacaaacataaataagtatcgcttggagagtagaagagatatagagatacttg----agaaaagcagcttatcgtacctgtttctg 414  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||    || |||| ||||||||| |||||||||||    
T  42795434 tgattttacaa-cataaataagtatcgcttggagagtataagagagatagagataattgataaagtaaagtagcttatcgcacctgtttctg 42795344  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 42795651 - 42795614
Alignment:
Q  145 atgacgggatgggcctcccactcataaaaggagcagag 182  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42795651 atgacgggatgggcctcccactcataaaaggagcagag 42795614  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 42795554 - 42795502
Alignment:
Q  206 aatcgaaaccagacaacacttataaacccgcactgaattacccctcaacatcg 258  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  42795554 aatcgaaaccagctaacacttataaacccgcactgagttacccctccacatcg 42795502  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 35085284 - 35085327
Alignment:
Q  206 aatcgaaaccagacaacacttataaacccgcactgaattacccc 249  Q
    |||| ||||||||| |||||||||||||||||||||||||||||    
T  35085284 aatccaaaccagacgacacttataaacccgcactgaattacccc 35085327  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 43026983 - 43026940
Alignment:
Q  213 accagacaacacttataaacccgcactgaattacccctcaacat 256  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  43026983 accagacgacacttataaacccgcactgaattacccctccacat 43026940  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 43026838 - 43026796
Alignment:
Q  345 taagtatcgcttggagagtagaagagatatagagatacttgag 387  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  43026838 taagtatcgcttggatagtagaagagagatagagatacttgag 43026796  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 35100591 - 35100634
Alignment:
Q  206 aatcgaaaccagacaacacttataaacccgcactgaattacccc 249  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||    
T  35100591 aatccaaaccagacgacacttataaacccgcattgaattacccc 35100634  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 38874398 - 38874350
Alignment:
Q  13 tgaattctgaattcaatgaatcaacggcttcaataacctgcattgcaac 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874398 tgaattctgaattcaatgaatcaacggcttcaataacctgcattgcaac 38874350  T

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