View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0731_high_3 (Length: 298)

Name: NF0731_high_3
Description: NF0731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0731_high_3
NF0731_high_3
[»] chr4 (3 HSPs)
chr4 (9-270)||(52352263-52352524)
chr4 (13-261)||(20296132-20296380)
chr4 (10-261)||(13616902-13617152)
[»] chr5 (16 HSPs)
chr5 (41-266)||(30521170-30521395)
chr5 (41-266)||(30561510-30561735)
chr5 (10-261)||(30475680-30475931)
chr5 (40-261)||(30206857-30207078)
chr5 (14-261)||(30436125-30436372)
chr5 (28-261)||(30749966-30750199)
chr5 (13-261)||(30400382-30400630)
chr5 (15-242)||(30060679-30060906)
chr5 (13-242)||(29853619-29853848)
chr5 (13-242)||(29872482-29872711)
chr5 (13-261)||(30483709-30483957)
chr5 (14-242)||(30712994-30713222)
chr5 (13-261)||(30338075-30338323)
chr5 (13-242)||(30241950-30242173)
chr5 (43-270)||(17983245-17983463)
chr5 (120-261)||(30676838-30676979)
[»] chr1 (2 HSPs)
chr1 (10-270)||(7099726-7099986)
chr1 (10-270)||(7581260-7581520)
[»] chr7 (1 HSPs)
chr7 (41-242)||(26707668-26707869)
[»] chr3 (1 HSPs)
chr3 (40-238)||(25293497-25293695)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 52352263 - 52352524
Alignment:
Q  9 gagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52352263 gagatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacattgttttaaggttgacgttaaatggaaataactc 52352362  T
Q  109 aacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacatta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52352363 aacctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcgcatta 52352462  T
Q  209 gacctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatcactttgcct 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52352463 gacctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatcgctttgcct 52352524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 20296380 - 20296132
Alignment:
Q  13 tgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacc 112  Q
    |||||||| || ||||| | ||||||  |||| || |||||||| ||||| |||||||||| ||| ||||  ||||  |||||||  || ||||||| ||    
T  20296380 tgaatcaattcttctttcaagatttctctatccttaggaaatatagcacaaaaagagaaacattgctttagagttggtgttaaataaaagtaactcagcc 20296281  T
Q  113 tcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacc 212  Q
    |||| |||||||||||||| || || | || ||||| |||||| |   | |||||||| |||  ||||||||||||| ||||  |||||  ||||| |||    
T  20296280 tcaaagcaggcaaaatagatttttcttgtggtaaagcccaaaggtcattgtctttaatatcacgccattccttttcttcattcattgagaccattaaacc 20296181  T
Q  213 tcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatc 261  Q
    ||| ||||||| ||| ||||||||||||||   ||| ||||||||||||    
T  20296180 tcccaatgcttttgctgcaagaggcaatccattacatttctttactatc 20296132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 13616902 - 13617152
Alignment:
Q  10 agatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactca 109  Q
    ||||||||||| || || |||  |||||  |||||||| |||||||   ||||||||| ||| | |||||| ||||||| || |||||| || |||||||    
T  13616902 agatgaatcaattcttcctttgtgatttttgtatctttaggaaatacaacacagaaagcgaatcattgtttaaaggttggcgataaatg-aagtaactca 13617000  T
Q  110 acctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattag 209  Q
     ||||||  |||| ||||||||||||||||    ||||  |||||||| ||||||| ||||||||  |||||||||||||||| | || |||   |||||    
T  13617001 gcctcaaatcaggaaaaatagaattctcataccgtaaatcccaaagctcgctctctctaatttcacaccattccttttctccactcctcgagtgtattag 13617100  T
Q  210 acctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatc 261  Q
    |   || ||||||||| | |||||||||||||| |||||||| || ||||||    
T  13617101 agaccccaatgcttgtcctgcaagaggcaatcctccacactttttaactatc 13617152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 266
Target Start/End: Complemental strand, 30521395 - 30521170
Alignment:
Q  41 tatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatc 140  Q
    ||||||||||||| |||||||| |||| ||||| ||||||||||||||   ||||||| || || |||||||| || ||||||||||||||||||||||     
T  30521395 tatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattctcatt 30521296  T
Q  141 tgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctcctaatgcttgtgcagcaagaggcaat 240  Q
     | ||||||||||| | |||| ||||||||||||| |||||| ||||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||||    
T  30521295 cggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaagaggcaat 30521196  T
Q  241 cccccacacttctttactatcacttt 266  Q
    ||||||||||||||||||||| ||||    
T  30521195 cccccacacttctttactatctcttt 30521170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 41 - 266
Target Start/End: Complemental strand, 30561735 - 30561510
Alignment:
Q  41 tatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatc 140  Q
    ||||||||||||| |||||||| |||| ||||| ||||||||||||||   ||||||| || || |||||||| || ||||||||||||||||||||||     
T  30561735 tatctttgggaaacatggcacaaaaagtgaaacattgttttaaggttgggtttaaatgaaagtagctcaaccttaaagcaggcaaaatagaattctcatt 30561636  T
Q  141 tgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctcctaatgcttgtgcagcaagaggcaat 240  Q
     | ||||||||||| | |||| ||||||||||||| |||||| ||||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||||    
T  30561635 cggtaaagaccaaatcctgctatctttaatttcaagccattctttttctccactccttgagcacattaggcctcccaatgcttgtgctgcaagaggcaat 30561536  T
Q  241 cccccacacttctttactatcacttt 266  Q
    ||||||||||||||||||||| ||||    
T  30561535 cccccacacttctttactatctcttt 30561510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 30475680 - 30475931
Alignment:
Q  10 agatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactca 109  Q
    |||||||||||||| || ||||  |||||| |||||||||||||||| ||||| ||||  ||||   | |||||||| |  |||||||| || || || |    
T  30475680 agatgaatcaaatcttcctttacaatttccatatctttgggaaatatcgcacaaaaagcaaaacaccgctttaaggtcggtgttaaatgaaagtagctta 30475779  T
Q  110 acctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattag 209  Q
    |||||||||| |||||||| |||||||||| || ||| | ||| || || || ||||||||||||| |||||| |||||  || | ||||||| ||||||    
T  30475780 acctcaaggctggcaaaatggaattctcatatggtaaggtccagagattactgtctttaatttcaagccattcattttcatcactccttgagcgcattag 30475879  T
Q  210 acctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatc 261  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||    
T  30475880 acctcccaatgcttgtgctgcaagaggcaatcctccacacttctttactatc 30475931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 261
Target Start/End: Original strand, 30206857 - 30207078
Alignment:
Q  40 gtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcat 139  Q
    |||||||||||||| || ||||| |||| |||||   | ||||||||||  |||||||| || || ||||||||||| ||||| |||||| |||||||||    
T  30206857 gtatctttgggaaacatagcacaaaaagcgaaacaccgctttaaggttggagttaaatgaaagtagctcaacctcaaagcaggtaaaatataattctcat 30206956  T
Q  140 ctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctcctaatgcttgtgcagcaagaggcaa 239  Q
     || ||||| |||||| |  |||||||||||||||| |||||| |||||| |||| ||||| | |||||||||||| ||||||||||| |||||||||||    
T  30206957 gtggtaaagcccaaagttcactctctttaatttcaagccattctttttcttcattccttgaactcattagacctcccaatgcttgtgctgcaagaggcaa 30207056  T
Q  240 tcccccacacttctttactatc 261  Q
    |||  |||| ||||||||||||    
T  30207057 tccatcacatttctttactatc 30207078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 30436125 - 30436372
Alignment:
Q  14 gaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacct 113  Q
    ||||||| || ||||||||||||||  |||| ||||||||||| ||||| |||||||||| ||| |||| |||||  |||||||  || |||||||| ||    
T  30436125 gaatcaattcttcttttaggatttctctatccttgggaaatatagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaatct 30436224  T
Q  114 caaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacct 213  Q
    ||| || |||||||||||||| || | || ||||| ||||||||  || |||||||| |||| ||||||||||||| |||| ||||||| ||| | |||     
T  30436225 caaagcgggcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttttcttcattccttgagctcatcaaaccc 30436324  T
Q  214 cctaatgcttgtgcagcaagaggcaatcccccacacttctttactatc 261  Q
    || ||||||| ||| ||||||||||||||   ||| ||||||||||||    
T  30436325 cccaatgcttttgctgcaagaggcaatccattacatttctttactatc 30436372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 261
Target Start/End: Original strand, 30749966 - 30750199
Alignment:
Q  28 tttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaa 127  Q
    ||||||||||| | ||||||||||||||| ||||| |||||||||| |||||||| || || || |||||  || |||||||||||||| ||||||||||    
T  30749966 tttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctcaaagcaggcaaaa 30750065  T
Q  128 tagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctcctaatgcttgtgc 227  Q
    | ||||| ||||||||||||  |||||| |  || |||||||||| || ||||||||||||  | || ||||||  ||||| || ||| ||||||| |||    
T  30750066 tggaattttcatctgataaatcccaaagttcactatctttaattttaagccattccttttcatctttccttgagttcattaaacttcccaatgcttttgc 30750165  T
Q  228 agcaagaggcaatcccccacacttctttactatc 261  Q
     ||||||||||||||   ||| ||||||||||||    
T  30750166 tgcaagaggcaatccattacatttctttactatc 30750199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 30400382 - 30400630
Alignment:
Q  13 tgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacc 112  Q
    |||||||| || ||||| | ||||||| |||| ||||||||||| ||||| |||||||||| ||| |||| ||| |  |||||||  || ||||||||||    
T  30400382 tgaatcaattcttctttcaagatttccctatccttgggaaatatagcacaaaaagagaaacattgctttagggtcggtgttaaataaaagtaactcaacc 30400481  T
Q  113 tcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacc 212  Q
    |||| | | |||||||| |||| || |||| ||||| ||||||||   | |||||||| |||| |||||||||||||||||| ||||||| ||| | |||    
T  30400482 tcaaagaacgcaaaatataattttcttctggtaaagcccaaagctcagtgtctttaatatcaagccattccttttctccattccttgagctcatcaaacc 30400581  T
Q  213 tcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatc 261  Q
    ||| ||||||| ||| ||||||||||||||   ||| ||||||||||||    
T  30400582 tcccaatgcttttgctgcaagaggcaatccattacatttctttactatc 30400630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 30060679 - 30060906
Alignment:
Q  15 aatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctc 114  Q
    |||||| || || ||||||||||| | ||||||||||||||| ||||| |||||||||| |||||||| || || || |||||  || ||||||||||||    
T  30060679 aatcaattcttcctttaggatttctgcatctttgggaaatatagcacaaaaagagaaacattgttttagggctgccggtaaataaaagtaactcaacctc 30060778  T
Q  115 aaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctc 214  Q
    || ||||||||||| ||||| ||||||||||||  |||||| |  || |||||||||| || ||||||||||||  | || ||||||  ||||| || ||    
T  30060779 aaagcaggcaaaatggaattttcatctgataaatcccaaagttcactgtctttaattttaagccattccttttcatctttccttgagttcattaaacttc 30060878  T
Q  215 ctaatgcttgtgcagcaagaggcaatcc 242  Q
    | |||| || ||| ||||||||||||||    
T  30060879 ccaatgattttgctgcaagaggcaatcc 30060906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 29853619 - 29853848
Alignment:
Q  13 tgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacc 112  Q
    |||||||| || ||||| ||||||||   ||| ||||||||||| || || || ||||||| |||||||| |||||  |||||||  || ||||||||||    
T  29853619 tgaatcaattcttctttcaggatttctccatccttgggaaatatagcgcaaaaggagaaacattgttttagggttggtgttaaataaaagtaactcaacc 29853718  T
Q  113 tcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacc 212  Q
    |||| ||| ||||||||||||| || | || ||||| ||||||||  || |||||||| |||| ||||||||||||| |||| ||||||| ||| | |||    
T  29853719 tcaaagcaagcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttttcttcattccttgagctcatcaaacc 29853818  T
Q  213 tcctaatgcttgtgcagcaagaggcaatcc 242  Q
    ||| |||| || ||| ||||||||||||||    
T  29853819 tcccaatgtttttgctgcaagaggcaatcc 29853848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 29872482 - 29872711
Alignment:
Q  13 tgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacc 112  Q
    |||||||| || ||||| |||||||   |||| ||||||||||| || || |||||||||| ||| |||| |||||  |||||||  || ||||||||||    
T  29872482 tgaatcaattcttctttcaggatttttctatccttgggaaatatagcgcaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacc 29872581  T
Q  113 tcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacc 212  Q
    |||| ||| ||||||||||||| || |  ||||||| ||||||||  || || ||||| |||| ||||||||||||| |||| ||||||| ||| | |||    
T  29872582 tcaaagcaagcaaaatagaattttcttgcgataaagcccaaagctcactgtccttaatatcaagccattccttttcttcattccttgagctcatcaaacc 29872681  T
Q  213 tcctaatgcttgtgcagcaagaggcaatcc 242  Q
    ||| ||||||| ||| ||||||||||||||    
T  29872682 tcccaatgcttttgctgcaagaggcaatcc 29872711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 30483709 - 30483957
Alignment:
Q  13 tgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacc 112  Q
    |||||||| || || || ||||||||  |||||||||||||||| ||||| || ||||||| ||| |||| |||||  |||||||  || ||||||||||    
T  30483709 tgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtgttaaataaaagtaactcaacc 30483808  T
Q  113 tcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacc 212  Q
    |||| ||||| |||||||| || |||| || ||||  ||||||||  || |||||||| |||| ||||||||||||| ||||  |||||  ||||| |||    
T  30483809 tcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttcattcattgagaccattaaacc 30483908  T
Q  213 tcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatc 261  Q
     || ||||||| ||| ||||||||||||||   ||| ||||||||||||    
T  30483909 ccccaatgcttttgctgcaagaggcaatccattacatttctttactatc 30483957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 30713222 - 30712994
Alignment:
Q  14 gaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacct 113  Q
    ||||||| || ||||||||||||||  |||| ||||||||||| ||||| |||||||||| ||| |||| |||||  | |||||  || ||||||| |||    
T  30713222 gaatcaattcttcttttaggatttctctatccttgggaaatatagcacaaaaagagaaacattgctttagggttggtgataaataaaagtaactcagcct 30713123  T
Q  114 caaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacct 213  Q
    ||| ||||||||||||||||| || | || ||||| ||||||||  || |||||||| |||| |||||| |||||| |||| ||||||| ||| | |||     
T  30713122 caaagcaggcaaaatagaattttcttgtggtaaagcccaaagctcactgtctttaatatcaagccattcattttcttcattccttgagctcatcaaaccc 30713023  T
Q  214 cctaatgcttgtgcagcaagaggcaatcc 242  Q
    || ||||||| ||| ||||| ||||||||    
T  30713022 cccaatgcttttgctgcaagtggcaatcc 30712994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 30338323 - 30338075
Alignment:
Q  13 tgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacc 112  Q
    |||||||| || || || ||||||||  |||||||||||||||| ||||| || ||||||| ||| |||| |||||  |||||||  || |||||||| |    
T  30338323 tgaatcaattcttccttcaggatttctctatctttgggaaatatagcacaaaaggagaaacattgctttagggttggtgttaaataaaagtaactcaaac 30338224  T
Q  113 tcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacc 212  Q
    |||| ||||| |||||||| || |||| || ||||  ||||||||  || |||||||| |||| ||||||||||||| ||||  |||||  ||||| |||    
T  30338223 tcaaagcaggtaaaatagatttttcatgtggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttcattcattgagaccattaaacc 30338124  T
Q  213 tcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatc 261  Q
     || ||||||| ||| ||||||||||||||   ||| ||||||||||||    
T  30338123 ccccaatgcttttgctgcaagaggcaatccattacatttctttactatc 30338075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 30242173 - 30241950
Alignment:
Q  13 tgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacc 112  Q
    |||||||| || || || ||||||||   ||||||||||||||| ||||| |||||||||| ||||||||  ||||  |||||||  || ||||||||||    
T  30242173 tgaatcaattcttccttcaggatttctccatctttgggaaatatagcacaaaaagagaaacattgttttagagttggtgttaaataaaagtaactcaacc 30242074  T
Q  113 tcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacc 212  Q
    |||| |||||||||||    ||||  | ||  || | |||||||| ||| ||||||||||||| |||||||| |||| |||| ||||||| ||||| |||    
T  30242073 tcaaagcaggcaaaat----ttct--tgtggcaaggcccaaagctcgctatctttaatttcaagccattcctcttcttcattccttgagctcattaaacc 30241980  T
Q  213 tcctaatgcttgtgcagcaagaggcaatcc 242  Q
    ||| |||||||  || ||||||||||||||    
T  30241979 tcccaatgctttcgctgcaagaggcaatcc 30241950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 270
Target Start/End: Original strand, 17983245 - 17983463
Alignment:
Q  43 tctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatctg 142  Q
    |||||||||||||| ||||| |||| ||||| ||||||||||||||  | |||||| || || |||||||| |  || || ||||||||||||||||  |    
T  17983245 tctttgggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctcaaccttagagctgggaaaatagaattctcatgcg 17983344  T
Q  143 ataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctcctaatgcttgtgcagcaagaggcaatcc 242  Q
     ||||| ||| |||| ||||||||||||||||| |||||||||||         ||||   |||||| |  |||||||||| ||| ||||||||||||||    
T  17983345 gtaaagcccagagctcgctctctttaatttcaaaccattcctttt---------ttgaatgcattaggcaccctaatgcttttgctgcaagaggcaatcc 17983435  T
Q  243 cccacacttctttactatcactttgcct 270  Q
     |||||||| ||||||||| | ||||||    
T  17983436 tccacacttttttactatctccttgcct 17983463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 30676979 - 30676838
Alignment:
Q  120 aggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctcctaat 219  Q
    ||||||||||||||| |  | || ||||| ||||||||  || |||||||| |||| ||||||||| ||| |||| ||||||| ||| | ||| || |||    
T  30676979 aggcaaaatagaatttttttgtggtaaagcccaaagctcactgtctttaatatcaagccattccttctcttcattccttgagctcatcaaaccccccaat 30676880  T
Q  220 gcttgtgcagcaagaggcaatcccccacacttctttactatc 261  Q
    |||| ||| ||||||||||||||   ||| ||||||||||||    
T  30676879 gcttttgctgcaagaggcaatccattacatttctttactatc 30676838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 270
Target Start/End: Original strand, 7099726 - 7099986
Alignment:
Q  10 agatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactca 109  Q
    ||||||||||| || || || | |||||  ||||||||| ||||||| ||||| |||| ||||| ||||||||||||||  | ||||||||| || ||||    
T  7099726 agatgaatcaattcttccttcatgatttttgtatctttgcgaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatggaagtagctca 7099825  T
Q  110 acctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattag 209  Q
    ||||||| || ||||||||||||||||| |  | ||||| ||| | ||  |||||||||||||| | |||| | |||||| || |||||||   ||||||    
T  7099826 acctcaaagctggcaaaatagaattctcgtgcggtaaagcccagatctcactctctttaatttctaaccatgctttttcttcacttcttgaatgcattag 7099925  T
Q  210 acctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatcactttgcct 270  Q
    ||  |||||||||||||| |||||||||||||| |||||||| ||||||||| | ||||||    
T  7099926 acaccctaatgcttgtgctgcaagaggcaatcctccacacttttttactatctccttgcct 7099986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 7581520 - 7581260
Alignment:
Q  10 agatgaatcaaatcgtcttttaggatttccgtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactca 109  Q
    ||||||||||| || || || | |||||  |||||||| |||||||| ||||| |||| ||||| ||||||||||||||  | |||||| || || ||||    
T  7581520 agatgaatcaattcttccttcatgatttttgtatctttaggaaatatagcacaaaaagcgaaacattgttttaaggttggtgataaatgaaagtagctca 7581421  T
Q  110 acctcaaggcaggcaaaatagaattctcatctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattag 209  Q
    | ||||  || |||||| ||||||||||||  | ||||  |||||||| ||||||||||||||||| ||||||||||||| || | ||||||  ||||||    
T  7581420 atctcagagctggcaaagtagaattctcatgcggtaaatcccaaagctcgctctctttaatttcaaaccattccttttcttcactccttgagtgcattag 7581321  T
Q  210 acctcctaatgcttgtgcagcaagaggcaatcccccacacttctttactatcactttgcct 270  Q
    ||  || ||||||||||| ||||||||||||||| |||| || ||||||||| | ||||||    
T  7581320 acaccccaatgcttgtgctgcaagaggcaatcccgcacatttttttactatctccttgcct 7581260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 26707668 - 26707869
Alignment:
Q  41 tatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcatc 140  Q
    |||||||||||||||| ||||| |||||||||| ||| |||| |||||  |||||||  || |||||||||||||| |||||||||||||| || || |     
T  26707668 tatctttgggaaatatagcacaaaaagagaaacattgctttagggttggtgttaaataaaagtaactcaacctcaaagcaggcaaaatagatttttcttg 26707767  T
Q  141 tgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctcctaatgcttgtgcagcaagaggcaat 240  Q
    || ||||  ||||||||  || |||||||| |||| ||||||||||||| ||||  ||||| |||||| |||||| ||||||| ||| |||||||| |||    
T  26707768 tggtaaatcccaaagctcactgtctttaatatcaagccattccttttcttcattcattgagaacattaaacctcccaatgcttttgctgcaagaggtaat 26707867  T
Q  241 cc 242  Q
    ||    
T  26707868 cc 26707869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 25293695 - 25293497
Alignment:
Q  40 gtatctttgggaaatatggcacagaaagagaaacgttgttttaaggttgacgttaaatggaaataactcaacctcaaggcaggcaaaatagaattctcat 139  Q
    |||||||| ||||| || ||||| ||||  |||| | | |||||||| |  |||||||  || || ||||||| ||||| ||| |||||||||||||| |    
T  25293695 gtatcttttggaaacatagcacaaaaagcaaaacatcgctttaaggtcggagttaaataaaagtagctcaaccacaaggaaggaaaaatagaattctctt 25293596  T
Q  140 ctgataaagaccaaagcttgctctctttaatttcaacccattccttttctccatttcttgagcacattagacctcctaatgcttgtgcagcaagaggca 238  Q
     |  ||||| ||||||| |||||   |||||||||| ||| || ||||||||| | ||||||| |||||||||||| ||| ||||||| ||||||||||    
T  25293595 gttgtaaagcccaaagcgtgctcagcttaatttcaagccactctttttctccactccttgagcgcattagacctccaaatacttgtgctgcaagaggca 25293497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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