View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0731_high_5 (Length: 270)

Name: NF0731_high_5
Description: NF0731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0731_high_5
NF0731_high_5
[»] chr4 (3 HSPs)
chr4 (1-245)||(52352112-52352356)
chr4 (21-245)||(20296311-20296534)
chr4 (5-216)||(13616780-13616990)
[»] chr5 (17 HSPs)
chr5 (6-254)||(29853456-29853703)
chr5 (6-254)||(30435961-30436208)
chr5 (15-254)||(30521348-30521586)
chr5 (15-254)||(30561688-30561926)
chr5 (36-244)||(30475530-30475737)
chr5 (6-254)||(29872319-29872566)
chr5 (15-254)||(30713148-30713386)
chr5 (15-241)||(17983065-17983290)
chr5 (5-254)||(30206667-30206915)
chr5 (21-254)||(30242104-30242333)
chr5 (6-254)||(30338239-30338483)
chr5 (6-254)||(30483549-30483793)
chr5 (21-198)||(30400275-30400451)
chr5 (21-196)||(30749846-30750020)
chr5 (21-196)||(30060572-30060746)
chr5 (160-254)||(30677035-30677129)
chr5 (161-237)||(30330999-30331075)
[»] chr1 (2 HSPs)
chr1 (2-245)||(7099575-7099817)
chr1 (15-245)||(7581442-7581671)
[»] chr7 (1 HSPs)
chr7 (6-245)||(26707489-26707724)
[»] chr3 (1 HSPs)
chr3 (83-196)||(25293715-25293827)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 52352356 - 52352112
Alignment:
Q  1 tttccatttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52352356 tttccatttaacgtcaaccttaaaacaatgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatg 52352257  T
Q  101 gccaatggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52352256 gccaatggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatc 52352157  T
Q  201 aagatcaatgattatttaggagacatttctttcaagatgcatgat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  52352156 aagatcaatgattatttaggagacatttctttcaagatgcatgat 52352112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 20296311 - 20296534
Alignment:
Q  21 taaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttatttcgtc 120  Q
    |||| ||| |||||||||| ||||| |||||||| || ||||  |||||| | ||||| || |||||||| || |||||||| |||||||| ||||| ||    
T  20296311 taaagcaatgtttctctttttgtgctatatttcctaaggatagagaaatcttgaaagaagaattgattcagctttggatggctaatggattaatttcatc 20296410  T
Q  121 taaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgattatttagg 220  Q
    || ||  |||||||| || ||| || ||||| || ||| ||||||| |||||||||||||| |||||||||||||| ||||| ||  |||| ||||   |    
T  20296411 tatgggtaatttggacgttgaa-gatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaagaaatcaaaatagatgaatattctag 20296509  T
Q  221 agacatttctttcaagatgcatgat 245  Q
    ||| |||| ||||||||||||||||    
T  20296510 agatatttatttcaagatgcatgat 20296534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 13616990 - 13616780
Alignment:
Q  5 catttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggcca 104  Q
    |||||| || ||||||| |||||| | ||| |||||||||   ||||||| ||||||||  |||||  ||| || || ||||||||||| |||||||| |    
T  13616990 catttatcgccaacctttaaacaatgattcgctttctgtgttgtatttcctaaagatacaaaaatcacaaaggaagaattgattcatctttggatggcta 13616891  T
Q  105 atggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaaga 204  Q
    ||| ||||||||| | |||  |||| |||||||| ||| || ||||| || |||||||||||||||||||||||||| || || |||||||||||| | |    
T  13616890 atgaatttatttcatgtaaaaaaaaattggaggttgaa-gatgttggaaacatgatttggaatgaattgtaccaaaaatctttttttcaagacatccata 13616792  T
Q  205 tcaatgattatt 216  Q
    | ||||||||||    
T  13616791 tgaatgattatt 13616780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 29853703 - 29853456
Alignment:
Q  6 atttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaa 105  Q
    |||||||  ||||| |||||||| ||||||| || || || ||||||||||| |||   |||||||| ||||| || |||||||| || |||||||| ||    
T  29853703 atttaacaccaaccctaaaacaatgtttctccttttgcgctatatttcccaaggatggagaaatcctgaaagaagaattgattcaactttggatggctaa 29853604  T
Q  106 tggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagat 205  Q
    |||||||||||| |||||||  |||||||| || ||| || ||||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  29853603 tggatttatttcatctaagggtaatttggacgttgaa-gatgttggaaatatggtttggaaggaattgtaccaaaagtcattctttcaagatatcaagat 29853505  T
Q  206 caatgattatttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
      |||| || |  |||||||||| ||||||||||||||||  |||||||    
T  29853504 ggatgaatactctggagacatttttttcaagatgcatgatcttgtccat 29853456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 30436208 - 30435961
Alignment:
Q  6 atttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaa 105  Q
    |||||||  ||||| |||| ||| |||||||||| ||||| ||||||||||| ||||  |||||||||||||| || |||||||  || |||||||| ||    
T  30436208 atttaacaccaaccctaaagcaatgtttctctttttgtgctatatttcccaaggatagagaaatcctaaaagaagaattgattcgactttggatggctaa 30436109  T
Q  106 tggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagat 205  Q
    || ||||||||| |||| ||  |||||||| || ||| || ||||| || ||| ||||||| |||||||||||||| |||||||||||||| | ||||||    
T  30436108 tgaatttatttcatctatgggtaatttggacgttgaa-gatgttggaaaaatggtttggaaggaattgtaccaaaaatcattctttcaagatagcaagat 30436010  T
Q  206 caatgattatttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
      |||| ||||| |||||||||||||||||||||||||||  |||||||    
T  30436009 ggatgaatattttggagacatttctttcaagatgcatgatcttgtccat 30435961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 30521348 - 30521586
Alignment:
Q  15 caaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttat 114  Q
    |||||||||||||| ||||| |||| |||||||| |||||||||||||  |||||| | || |  ||||| |||||||||||||| ||||| ||||||||    
T  30521348 caaccttaaaacaatgtttcactttttgtgccatgtttcccaaagatatagaaatcatgaagggagatttaattcatctctggatcgccaacggatttat 30521447  T
Q  115 ttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgatta 214  Q
     || || | ||||||||| ||||||| |||| ||||| |||||||||||||||||||||| |||||||||||| || ||||| ||||||||    ||| |    
T  30521448 atcatcaagggaaaatttagaggtag-aagatgttggaaatatgatttggaatgaattgtgccaaaagtcatttttccaagaaatcaagatggtcgatga 30521546  T
Q  215 tttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
    || ||||| ||||||||||||| ||||||||  |||||||    
T  30521547 ttcaggaggcatttctttcaagttgcatgatcttgtccat 30521586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 30561688 - 30561926
Alignment:
Q  15 caaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttat 114  Q
    |||||||||||||| ||||| |||| |||||||| |||||||||||||  |||||| | || |  ||||| |||||||||||||| ||||| ||||||||    
T  30561688 caaccttaaaacaatgtttcactttttgtgccatgtttcccaaagatatagaaatcatgaagggagatttaattcatctctggatcgccaacggatttat 30561787  T
Q  115 ttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgatta 214  Q
     || || | ||||||||| ||||||| |||| ||||| |||||||||||||||||||||| |||||||||||| || ||||| ||||||||    ||| |    
T  30561788 atcatcaagggaaaatttagaggtag-aagatgttggaaatatgatttggaatgaattgtgccaaaagtcatttttccaagaaatcaagatggtcgatga 30561886  T
Q  215 tttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
    || ||||| ||||||||||||| ||||||||  |||||||    
T  30561887 ttcaggaggcatttctttcaagttgcatgatcttgtccat 30561926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 36 - 244
Target Start/End: Complemental strand, 30475737 - 30475530
Alignment:
Q  36 ctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttatttcgtctaaggaaaatttgga 135  Q
    |||| ||||| |||||||||||||||| ||||||  |||| || |||||||||||||| ||||||| ||||||||||||||  || ||||  ||||||||    
T  30475737 ctttttgtgcgatatttcccaaagatatggaaattgtaaaggaagatttgattcatctatggatgggcaatggatttattttctcaaaggctaatttgga 30475638  T
Q  136 ggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgattatttaggagacatttctttcaa 235  Q
     ||||||     ||||||||||||||||||| ||| ||| |||||| |||||||| ||||||||||||||  ||||||||| |||||||||| |||||||    
T  30475637 tgtagaatttt-ttggcaatatgatttggaaggaactgtgccaaaaatcattcttccaagacatcaagatagatgattattcaggagacattactttcaa 30475539  T
Q  236 gatgcatga 244  Q
    |||||||||    
T  30475538 gatgcatga 30475530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 29872566 - 29872319
Alignment:
Q  6 atttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaa 105  Q
    |||||||  ||||| |||| ||| |||||||||| || || ||||||||||| ||||   ||||||| ||||| || |||||||| || |||||||| ||    
T  29872566 atttaacaccaaccctaaagcaatgtttctctttttgcgctatatttcccaaggatagaaaaatcctgaaagaagaattgattcaactttggatggctaa 29872467  T
Q  106 tggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagat 205  Q
    || ||||||||| |||| ||  |||||||| || ||| || ||||| || ||| ||||||| |||||||||||||| ||||||||||||||   ||||||    
T  29872466 tgaatttatttcatctatgggtaatttggacgttgaa-gatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaagatggcaagat 29872368  T
Q  206 caatgattatttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
      |||| ||||  |||||||||||||||||||||||||||  |||||||    
T  29872367 ggatgaatattctggagacatttctttcaagatgcatgatcttgtccat 29872319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 30713148 - 30713386
Alignment:
Q  15 caaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttat 114  Q
    ||||| |||| ||| |||||||||| ||||| ||||||||||| ||||  |||||||||||||| || |||||||  || |||||||| |||||||||||    
T  30713148 caaccctaaagcaatgtttctctttttgtgctatatttcccaaggatagagaaatcctaaaagaagaattgattcgactttggatggctaatggatttat 30713247  T
Q  115 ttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgatta 214  Q
    ||| |||| ||  |||||||| || | |||| ||||| || ||| ||||||| |||||||||||||| |||||||| |||||   ||||||  |||| ||    
T  30713248 ttcatctatgggtaatttggacgttg-aagatgttggaaacatggtttggaaggaattgtaccaaaaatcattcttccaagattgcaagatggatgaata 30713346  T
Q  215 tttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
    ||  ||| |||||||||| || |||||||||  |||||||    
T  30713347 ttctggaaacatttcttttaaaatgcatgatcttgtccat 30713386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 17983290 - 17983065
Alignment:
Q  15 caaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttat 114  Q
    |||||||||||||| ||||| |||| ||||| ||||||||||||||  | |||||| | ||||| ||  | |||||||| |||||||| |||  ||||||    
T  17983290 caaccttaaaacaatgtttcgctttttgtgctatatttcccaaagaagcagaaatcatgaaagaagaactaattcatctttggatggctaataaatttat 17983191  T
Q  115 ttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgatta 214  Q
     || ||||   ||||||||||||| ||| || |||||||| |||||||||||||||||||||||||| || ||||||||||||||| | ||  |||||||    
T  17983190 ctcatctagaaaaaatttggaggttgaa-gatgttggcaacatgatttggaatgaattgtaccaaaaatctttctttcaagacatccatattgatgatta 17983092  T
Q  215 tttaggagacatttctttcaagatgca 241  Q
    || | | |  ||||||||||| |||||    
T  17983091 ttcaagtgtgatttctttcaaaatgca 17983065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 30206915 - 30206667
Alignment:
Q  5 catttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggcca 104  Q
    ||||||||  |||||||||| |   ||||| |||| ||||| || |||||||||||||| ||| || | |  || || ||||||||||| |||||||| |    
T  30206915 catttaactccaaccttaaagcggtgtttcgctttttgtgctatgtttcccaaagatacagaattcgtgagggaagaattgattcatctttggatggcta 30206816  T
Q  105 atggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaaga 204  Q
    ||| ||||||||  |||| ||||||| ||||||| ||| || |||||||  ||| ||||||||||||||| |||||| || |||||||||||||||||||    
T  30206815 atgaatttattttatctagggaaaatatggaggttgaa-gatgttggcagcatggtttggaatgaattgtgccaaaaatctttctttcaagacatcaaga 30206717  T
Q  205 tcaatgattatttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
    |  |  |   ||  |||||||||||||||||||||||||||  |||||||    
T  30206716 tggacaacggttctggagacatttctttcaagatgcatgatcttgtccat 30206667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 30242104 - 30242333
Alignment:
Q  21 taaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttatttcgtc 120  Q
    |||||||| |||||||||| ||||| |||||||||||||||   |||||||| || || || |||||||| ||||| ||||| |||||||||||| |       
T  30242104 taaaacaatgtttctctttttgtgctatatttcccaaagatggagaaatcctgaaggaagaattgattcagctctgaatggctaatggatttattgca-- 30242201  T
Q  121 taaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgattatttagg 220  Q
     |||   || || ||||| ||| || ||||| || ||| ||||||| |||||||||||||| ||||| |||||||||| ||| ||  |||| ||||  ||    
T  30242202 -aagaggaaattagaggttgaa-gatgttggaaacatggtttggaaggaattgtaccaaaaatcattttttcaagacagcaaaatggatgaatattctgg 30242299  T
Q  221 agacatttctttcaagatgcatgatgatgtccat 254  Q
    |||||||||||||||||||||||||  |||||||    
T  30242300 agacatttctttcaagatgcatgatcttgtccat 30242333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 30338239 - 30338483
Alignment:
Q  6 atttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaa 105  Q
    |||||||  ||||| |||| ||| ||||||| || ||||| ||||||||||||||||  |||||||| || || || |||||||| || |||||||| ||    
T  30338239 atttaacaccaaccctaaagcaatgtttctccttttgtgctatatttcccaaagatagagaaatcctgaaggaagaattgattcaactttggatggctaa 30338338  T
Q  106 tggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagat 205  Q
    |||||||||| |    |||   ||||| ||||| ||| || ||||| || ||| ||||||| ||||||||| |||| || ||||||||||| | ||||||    
T  30338339 tggatttattgca---aagaggaatttagaggttgaa-gatgttggaaacatggtttggaaggaattgtacaaaaaatcgttctttcaagatagcaagat 30338434  T
Q  206 caatgattatttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
      |||| ||||  |||||||||||||||||||||||||||  |||||||    
T  30338435 ggatgaatattctggagacatttctttcaagatgcatgatcttgtccat 30338483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 30483793 - 30483549
Alignment:
Q  6 atttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaa 105  Q
    |||||||  ||||| |||| ||| ||||||| || ||||| ||||||||||||||||  |||||||| || || || |||||||| || |||||||| ||    
T  30483793 atttaacaccaaccctaaagcaatgtttctccttttgtgctatatttcccaaagatagagaaatcctgaaggaagaattgattcagctttggatggctaa 30483694  T
Q  106 tggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagat 205  Q
    ||||||||||    | |||   ||||| ||||| | |||| ||||| || ||| ||||||| |||||||||  ||| || ||||||||||| | ||||||    
T  30483693 tggatttatt---gcaaagaggaatttagaggttg-aagatgttggaaacatggtttggaaggaattgtacagaaaatcgttctttcaagatagcaagat 30483598  T
Q  206 caatgattatttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
      |||| ||||  |||||||||||||||||||||||||||  |||||||    
T  30483597 ggatgaatattctggagacatttctttcaagatgcatgatcttgtccat 30483549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 30400451 - 30400275
Alignment:
Q  21 taaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttatttcgtc 120  Q
    |||| ||| |||||||||| ||||| ||||||||||| |||| ||||||| | ||||| || |||||||| || |||||||| |||||||| ||||| ||    
T  30400451 taaagcaatgtttctctttttgtgctatatttcccaaggatagggaaatcttgaaagaagaattgattcagctttggatggctaatggattgatttcatc 30400352  T
Q  121 taaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagaca 198  Q
    |  ||  |||  |||||| | |||| |||||||  ||| ||||| |||||||||||||||| ||||||||||||||||    
T  30400351 ttggggtaatacggaggttg-aagatgttggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagaca 30400275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 30750020 - 30749846
Alignment:
Q  21 taaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttatttcgtc 120  Q
    |||||||| |||||||||| ||||| ||||||||||||||| | ||||||||||| ||  | ||||||   || |||||||| |||||||| ||||| ||    
T  30750020 taaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaaaaattgatttggctttggatggctaatggattgatttcatc 30749921  T
Q  121 taaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaaga 196  Q
    || ||  ||| ||||||| | |||| |||||||  ||| ||||| |||||||||| ||||| ||||||||||||||    
T  30749920 taggggtaatatggaggttg-aagatgttggcatcatggtttgggatgaattgtatcaaaaatcattctttcaaga 30749846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 30060746 - 30060572
Alignment:
Q  21 taaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttatttcgtc 120  Q
    |||||||| |||||||||| ||||| ||||||||||||||| | ||||||||||| || || ||||||   || |||||||| |||||||| ||||| ||    
T  30060746 taaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatc 30060647  T
Q  121 taaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaaga 196  Q
    || ||  | |  |||||| | |||| |||||||  ||| | ||| |||||||||||||||| ||||||||||||||    
T  30060646 taggggtactacggaggttg-aagatgttggcatcatggtgtgggatgaattgtaccaaaaatcattctttcaaga 30060572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 30677035 - 30677129
Alignment:
Q  160 tttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgattatttaggagacatttctttcaagatgcatgatgatgtccat 254  Q
    ||||||| |||||||||||||| |||||||||||||| |  |||||  |||| ||||  |||||||||||||| ||||||||||||  |||||||    
T  30677035 tttggaaggaattgtaccaaaaatcattctttcaagatagaaagatggatgaatattctggagacatttcttttaagatgcatgatcttgtccat 30677129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 30330999 - 30331075
Alignment:
Q  161 ttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgattatttaggagacatttctttcaaga 237  Q
    |||||||| ||||| ||||||  |||||||| |||||||||||||| |||| ||||    |||||||||||| ||||    
T  30330999 ttggaatggattgtgccaaaaaccattctttgaagacatcaagatctatgaatattctaaagacatttctttaaaga 30331075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 245
Target Start/End: Complemental strand, 7099817 - 7099575
Alignment:
Q  2 ttccatttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatgg 101  Q
    ||||||||| |  |||||||||||||| ||||| |||| ||||| ||||||| |||||||||  ||||| | || || || ||||||||||| |||||||    
T  7099817 ttccatttatcaccaaccttaaaacaatgtttcgctttttgtgctatatttcgcaaagatacaaaaatcatgaaggaagaattgattcatctttggatgg 7099718  T
Q  102 ccaatggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatca 201  Q
    | |||||||||||||| ||||   ||||||||||||| | |||| ||||| || |||||||||||||||||||||||||| || |||||||||||||||     
T  7099717 ctaatggatttatttcatctagaaaaaatttggaggttg-aagatgttggaaacatgatttggaatgaattgtaccaaaaatctttctttcaagacatcc 7099619  T
Q  202 agatcaatgattatttaggagacatttctttcaagatgcatgat 245  Q
    | ||  ||||||||| | |||  ||||||||||| |||||||||    
T  7099618 atatggatgattattcaagagtgatttctttcaaaatgcatgat 7099575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 7581442 - 7581671
Alignment:
Q  15 caaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttat 114  Q
    |||||||||||||| ||||| |||| ||||| |||||||| ||||||||  ||||| | || || || ||||||||||| |||||||| |||| ||||||    
T  7581442 caaccttaaaacaatgtttcgctttttgtgctatatttcctaaagatacaaaaatcatgaaggaagaattgattcatctttggatggctaatgaatttat 7581541  T
Q  115 ttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgatta 214  Q
    ||| ||||   ||||||||||||| | |||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||  | ||  ||||| |    
T  7581542 ttcatctagaaaaaatttggaggttg-aagatgttggcaacatgatttggaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatga 7581640  T
Q  215 tttaggagacatttctttcaagatgcatgat 245  Q
    || | |||||||||||||||| |||||||||    
T  7581641 ttcaagagacatttctttcaaaatgcatgat 7581671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 26707724 - 26707489
Alignment:
Q  6 atttaacgtcaaccttaaaacaacgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaa 105  Q
    |||||||  ||||| |||| ||| |||||||||| ||||| ||||||||||||||||  |||||| | || || || |||||||| || |||||||| ||    
T  26707724 atttaacaccaaccctaaagcaatgtttctctttttgtgctatatttcccaaagatagagaaatcttgaaggaagaattgattcaactttggatggctaa 26707625  T
Q  106 tggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagat 205  Q
    |||||||||| |    |||   ||||| ||||| ||| || ||||| || ||| ||||||| |||||||||||||| |||||||||||||||   |||||    
T  26707624 tggatttattgca---aagaggaatttagaggttgaa-gatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaagactgtaagat 26707529  T
Q  206 caatgattatttaggagacatttctttcaagatgcatgat 245  Q
       ||| ||||  |||||||||||||||||||||||||||    
T  26707528 gggtgaatattctggagacatttctttcaagatgcatgat 26707489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 196
Target Start/End: Original strand, 25293715 - 25293827
Alignment:
Q  83 ttgattcatctctggatggccaatggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaag 182  Q
    |||| |||||| |||||||| |||||||||||||| |||| ||||||||||||||| | |||| |||||||  ||| ||||||||||||||| ||||||     
T  25293715 ttgactcatctttggatggctaatggatttatttcatctagggaaaatttggaggttg-aagatgttggcagcatggtttggaatgaattgtgccaaaaa 25293813  T
Q  183 tcattctttcaaga 196  Q
    ||||||||||||||    
T  25293814 tcattctttcaaga 25293827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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