View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0731_low_6 (Length: 380)
Name: NF0731_low_6
Description: NF0731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0731_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 42529556 - 42529436
Alignment:
| Q |
93 |
acatcatcaaattttacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatt |
192 |
Q |
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| T |
42529556 |
acatcatcaaattttacaacaaaagaatctgactgaaaaagatcaaaaccggcatccggcttggccctccttgtgtattcaatacttgttgatctgtatt |
42529457 |
T |
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| Q |
193 |
tccaagaactgagattcccat |
213 |
Q |
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| T |
42529456 |
tccaagaactgagattcccat |
42529436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 93 - 192
Target Start/End: Complemental strand, 42535278 - 42535179
Alignment:
| Q |
93 |
acatcatcaaattttacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatt |
192 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
42535278 |
acatcatcaaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
42535179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 42535149 - 42535104
Alignment:
| Q |
231 |
gtaataaggcagtcattgttcttgttgtagaagaggctcttgatga |
276 |
Q |
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| T |
42535149 |
gtaataagtgagtcattgttcttgttgtagaagagtctcctgatga |
42535104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 268
Target Start/End: Complemental strand, 27821993 - 27821896
Alignment:
| Q |
171 |
tcaatacttgttgatctgtatttccaagaactgagattcccatgaccgtaatcagacagcgtaataaggcagtcattgttcttgttgtagaagaggct |
268 |
Q |
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| T |
27821993 |
tcaatccttgttgatctgcacttcaaagaactgaaattctcagaagcataaacagacactgtaataagtgagtcattgttcttgttgtagaagaggct |
27821896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 27822138 - 27822082
Alignment:
| Q |
114 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtat |
170 |
Q |
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| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgtat |
27822082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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