View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0731_low_8 (Length: 369)

Name: NF0731_low_8
Description: NF0731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0731_low_8
NF0731_low_8
[»] chr1 (2 HSPs)
chr1 (39-356)||(42099850-42100168)
chr1 (317-362)||(52036164-52036209)
[»] chr3 (6 HSPs)
chr3 (318-362)||(43721100-43721144)
chr3 (321-362)||(8627846-8627887)
chr3 (322-361)||(46807962-46808001)
chr3 (318-362)||(38341259-38341303)
chr3 (318-358)||(50716927-50716967)
chr3 (318-358)||(50795880-50795920)
[»] chr8 (3 HSPs)
chr8 (318-362)||(34664585-34664629)
chr8 (318-362)||(40525027-40525071)
chr8 (318-362)||(5338483-5338527)
[»] chr7 (3 HSPs)
chr7 (318-362)||(46273046-46273090)
chr7 (318-362)||(30714161-30714205)
chr7 (319-361)||(39972238-39972280)
[»] chr5 (4 HSPs)
chr5 (321-362)||(36339475-36339516)
chr5 (321-362)||(18342130-18342171)
chr5 (317-358)||(37883124-37883165)
chr5 (322-362)||(38363685-38363725)
[»] chr6 (1 HSPs)
chr6 (318-360)||(7423584-7423626)
[»] chr4 (1 HSPs)
chr4 (318-358)||(53893461-53893501)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 39 - 356
Target Start/End: Complemental strand, 42100168 - 42099850
Alignment:
Q  39 taaataagcttgtaaattgtaatcacatatttgtacaatcattcataaggaaatttgaccacttttcgccgtagatttgggtcaaaattgttgtttcagg 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42100168 taaataagcttgtaaattgtaatcacatatttgtacaatcattcataaggaaatctgaccacttttcgccgtagatttgggtcaaaattgttgtttcagg 42100069  T
Q  139 atcgtaaatcttgaatattattgtgtgaagttaattagaagcatctacaaagataagtagaaccaacacatttgggggaaaatggtgaattgtataaaga 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  42100068 atcgtaaatcttgaatataattgtgtgaagttaattagaagcatctacgaagataaatagaaccaacacatttgggggaaaatggtgaactgtataaaga 42099969  T
Q  239 aaatgtaggttcgttttagaatattttg-nnnnnnnnactaaatgatagaataaattggccactcatttatttatccaatgactattactttttccactc 337  Q
    |||  |||||||||||||||||||||||         |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| |||| |    
T  42099968 aaaactaggttcgttttagaatattttgtttaagtttactaaatgatggaataatttggccactcatttatttatctaatgactattacttttcccaccc 42099869  T
Q  338 tatggccttctcgcacgcc 356  Q
     ||| ||||||||||||||    
T  42099868 gatgaccttctcgcacgcc 42099850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 52036164 - 52036209
Alignment:
Q  317 tgactattactttttccactctatggccttctcgcacgccctatgc 362  Q
    |||||||||||||| ||| | |||||||||||||||||| ||||||    
T  52036164 tgactattacttttcccattttatggccttctcgcacgctctatgc 52036209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 43721100 - 43721144
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccctatgc 362  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  43721100 gactattactttttccaccctatggccttctcgcacgccctatgc 43721144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 8627887 - 8627846
Alignment:
Q  321 tattactttttccactctatggccttctcgcacgccctatgc 362  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  8627887 tattactttttccaccctatggccttctcgcacgccctatgc 8627846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 46807962 - 46808001
Alignment:
Q  322 attactttttccactctatggccttctcgcacgccctatg 361  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  46807962 attacttttcccaccctatggccttctcgcacgccctatg 46808001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 38341259 - 38341303
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccctatgc 362  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||    
T  38341259 gactattacttttcccaccccatgaccttctcgcacgccctatgc 38341303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 50716967 - 50716927
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccct 358  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  50716967 gactattactttttccaccctatggccttctcccgcgccct 50716927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 50795880 - 50795920
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccct 358  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  50795880 gactattactttttccaccctatggccttctcccgcgccct 50795920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 34664629 - 34664585
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccctatgc 362  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  34664629 gactattacttttaccaccctatggccttctcgcacgccctatgc 34664585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 40525071 - 40525027
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccctatgc 362  Q
    |||||||| |||| |||| ||||||||||||||||||||||||||    
T  40525071 gactattatttttcccaccctatggccttctcgcacgccctatgc 40525027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 5338483 - 5338527
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccctatgc 362  Q
    |||||||| |||| |||  ||||||||||||||||||||||||||    
T  5338483 gactattaattttcccatcctatggccttctcgcacgccctatgc 5338527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 46273090 - 46273046
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccctatgc 362  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  46273090 gactattacttttcccaccctatggccttctcgcacgccctatgc 46273046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 30714205 - 30714161
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccctatgc 362  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||    
T  30714205 gactattacttttaccaccctatggccttctcacacgccctatgc 30714161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 39972238 - 39972280
Alignment:
Q  319 actattactttttccactctatggccttctcgcacgccctatg 361  Q
    ||||||||||||||| | |||||||||||| ||||||||||||    
T  39972238 actattactttttcctccctatggccttctagcacgccctatg 39972280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 36339475 - 36339516
Alignment:
Q  321 tattactttttccactctatggccttctcgcacgccctatgc 362  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  36339475 tattactttttccaccctatggccttctcgcgcgccctatgc 36339516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 18342171 - 18342130
Alignment:
Q  321 tattactttttccactctatggccttctcgcacgccctatgc 362  Q
    |||||||||| |||| ||||||||||||||| ||||||||||    
T  18342171 tattacttttcccaccctatggccttctcgcgcgccctatgc 18342130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 37883124 - 37883165
Alignment:
Q  317 tgactattactttttccactctatggccttctcgcacgccct 358  Q
    ||||||||||||||||||| |||| |||||||||| ||||||    
T  37883124 tgactattactttttccaccctattgccttctcgcgcgccct 37883165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 38363685 - 38363725
Alignment:
Q  322 attactttttccactctatggccttctcgcacgccctatgc 362  Q
    ||||||||||||||  |||| ||||||||||||||||||||    
T  38363685 attactttttccaccatatgaccttctcgcacgccctatgc 38363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 7423626 - 7423584
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccctat 360  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  7423626 gactattactttttccactctatggtcttctcccgcgccctat 7423584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 53893461 - 53893501
Alignment:
Q  318 gactattactttttccactctatggccttctcgcacgccct 358  Q
    ||||||||||||| |||| ||||||||||||| ||||||||    
T  53893461 gactattacttttcccaccctatggccttctcccacgccct 53893501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2688 times since January 2019
Visitors: 4796