View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0732_low_1 (Length: 632)
Name: NF0732_low_1
Description: NF0732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0732_low_1 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 25732 - 26172
Alignment:
| Q |
13 |
catcatcatcaccaacaacagcaacaatacgaacagcttttgaagtatcgagttggcgaaacatcgggtgaaaacaacaacggaatggtggataattaca |
112 |
Q |
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| T |
25732 |
catcatcatcatcaacaacagcaacaatacgaacagcttttgaagtatcgagttggcgaaacatcgggtgaaaacaacaacggaatggtggataattaca |
25831 |
T |
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| Q |
113 |
tgcctcagacacaaacttcaggaggattttatggtgcaaattcttttgataaaatgagttttgcagatgtgatgcagtttgcagattttggacctaaatt |
212 |
Q |
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| T |
25832 |
tgcctcagacacaaacttcaggaggattttatggtgcaaattcttttgataaaatgagttttgcagatgtgatgcagtttgcagattttggacctaaatt |
25931 |
T |
|
| Q |
213 |
agccttaaaccgcgaagaatcaggtatcgaagacccggtttattttctcaagtttcctgtcttaaacaataagatagaagaccaaaacttgatgttaagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25932 |
agccttaaaccgcgaagaatcaggtatcgaagacccggtttattttctcaagtttcctgtcttaaacaataagatagaagaccaaaacttgatgttaagt |
26031 |
T |
|
| Q |
313 |
ggtgatgatgggttaggagaaaatgacgagaggttcaaattaacaagcttggaggataaatcaagagatcaacaagatcacgaagaagctcgagtttctg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26032 |
ggtgatgatgggttaggagaaaatgacgagaggttcaaattaacaagcgtggaggataaatcaagagatcaacaagatcacgaagaagctcgagtttctg |
26131 |
T |
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| Q |
413 |
acgtgaacaactcggtgcaagagaagaattgtgcagtagtg |
453 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26132 |
acgagaacaactcggtgcaagagaagaattgtgcagtagtg |
26172 |
T |
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