View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0732_low_3 (Length: 479)
Name: NF0732_low_3
Description: NF0732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0732_low_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 64 - 479
Target Start/End: Original strand, 36941335 - 36941750
Alignment:
| Q |
64 |
agattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagaccaacaatca |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941335 |
agattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagaccaacaatca |
36941434 |
T |
|
| Q |
164 |
tcacgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccac |
263 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941435 |
tcatgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccac |
36941534 |
T |
|
| Q |
264 |
aatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactg |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36941535 |
aatgtttatttcattttcttgagcattaattattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactg |
36941634 |
T |
|
| Q |
364 |
gcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgataaagctgtggattgtccaccttttgcacgatccacaaacctagctaaac |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||| |
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| T |
36941635 |
gcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgctaaagctgtggtttgtccaccttttgcatgatccacaaaccttgctaaac |
36941734 |
T |
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| Q |
464 |
cgaaatctccaagttt |
479 |
Q |
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|||||||||||||||| |
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| T |
36941735 |
cgaaatctccaagttt |
36941750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 64 - 479
Target Start/End: Complemental strand, 36939789 - 36939368
Alignment:
| Q |
64 |
agattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagaccaacaatca |
163 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939789 |
agattaggaagtggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagaccaacaatca |
36939690 |
T |
|
| Q |
164 |
tcacgcacttgatttgttcctcttcataatctccatctagtcttggatctactgcttcaacaattctccctcttccatatagcccccaaacccattccac |
263 |
Q |
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||| ||||||||||||||| | |||| |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| |
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| T |
36939689 |
tcatgcacttgatttgttcttgttcaaaatctccatctagttttggatctactgcttcaagaattttccctcttccatatagcccccaaacccactccac |
36939590 |
T |
|
| Q |
264 |
aatgtttatttcattttcttgagcatta------attattggttttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttct |
357 |
Q |
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||| | |||||||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |
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| T |
36939589 |
aatatgtatttcattttcttgagccttaaggtttattataggttttcttccgcaagctatctctaaagcaacaataccaaaactatacacgtctgtttct |
36939490 |
T |
|
| Q |
358 |
ttactggcccttcctgtggtagcacattcaggagccatgtatcccatagtccctgataaagctgtggattgtccaccttttgcacgatccacaaacctag |
457 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | |||| ||||||||||| | ||||||||||| | |
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| T |
36939489 |
ttactagctcttcctgtggtagcacattcaggagccatgtatcccaaagtccctgctaaagctgtagtttgtgcaccttttgcatggtccacaaaccttg |
36939390 |
T |
|
| Q |
458 |
ctaaaccgaaatctccaagttt |
479 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
36939389 |
ctaaaccgaaatctccaagttt |
36939368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 36949775 - 36949695
Alignment:
| Q |
301 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
381 |
Q |
| |
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||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
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| T |
36949775 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36949695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 381
Target Start/End: Complemental strand, 36959909 - 36959829
Alignment:
| Q |
301 |
tttcttccacaagctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtggtagca |
381 |
Q |
| |
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||||| ||||||||||| || |||||||||| ||||||||| || ||||| | |||| |||| ||| ||||| | |||||| |
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|
| T |
36959909 |
tttctaccacaagctatttccaaagcaacaactccaaaactgtatacatcagattctctactagcctttcctcttgtagca |
36959829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 28293964 - 28294072
Alignment:
| Q |
64 |
agattaggcaatggaacttcaaaattaagcacttgaatagcttgtcttattgaaggcctattattaggatcaggatgagcacaccaaagaccaacaatca |
163 |
Q |
| |
|
||||| ||||| | ||| |||||||||||||||||||| |||||||| || || || ||| | || |||||||||||||||||| | |||||||||| |
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| T |
28293964 |
agatttggcaaggcaacctcaaaattaagcacttgaattgcttgtctaatcgatggtctaagactaacatcaggatgagcacaccacaatccaacaatca |
28294063 |
T |
|
| Q |
164 |
tcacgcact |
172 |
Q |
| |
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||| ||||| |
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| T |
28294064 |
tcaagcact |
28294072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 28294221 - 28294281
Alignment:
| Q |
315 |
tatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcctgtg |
375 |
Q |
| |
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|||||| |||||||| || ||||||||||||||||| | |||||||| ||||| |||||| |
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|
| T |
28294221 |
tatctccaaagcaactatcccaaaactatacacatctgactctttacttgccctacctgtg |
28294281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 372
Target Start/End: Original strand, 3054432 - 3054491
Alignment:
| Q |
313 |
gctatctctaaagcaacaattccaaaactatacacatcggtttctttactggcccttcct |
372 |
Q |
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|||| ||| ||||||||||||||||||||||||| || | ||||||||| ||||||||| |
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| T |
3054432 |
gctagctccaaagcaacaattccaaaactatacatgtcagattctttactagcccttcct |
3054491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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