View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0732_low_4 (Length: 426)
Name: NF0732_low_4
Description: NF0732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0732_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 48052257 - 48052070
Alignment:
| Q |
9 |
gaataatattgtgagaaaatgatgaataactaacctgatgaagtcctgctatgctatgcatgtgcatgttgagacaagacagtggaagctagaatttacc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48052257 |
gaataatattgtgagaaaatgatgaataactaacctgatgaagtcctgctatgctatgcatgtgcatgttgagacaagacagtggaagctagaatttacc |
48052158 |
T |
|
| Q |
109 |
gtcttagttcaagcaaatacttgaagtataaccttttcttttttatgtgttggaaactggaaagtgtgtataattaattccgtaattc |
196 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48052157 |
gtcttagttcaagcaaatacttgaaatataaccttttcttttttatgtgttggaaactggaaagtgtgtataattaattccgtaattc |
48052070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 280 - 397
Target Start/End: Complemental strand, 48051985 - 48051870
Alignment:
| Q |
280 |
cattaacgaggttaaccacatatctacgtaaattagcatgatctatctccctctatgtgctgatgtggcacactgccatgttattttccagcaaataaaa |
379 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48051985 |
cattaacgaggttaaccacatgt--acgtaaattagcatgatctatctccctctatatgctgatgtggcacactgccatgttattttccagcaaataaaa |
48051888 |
T |
|
| Q |
380 |
tgaataaaagagtgatgg |
397 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
48051887 |
tgaataaaagagtgatgg |
48051870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 397
Target Start/End: Complemental strand, 48044263 - 48044175
Alignment:
| Q |
309 |
aaattagcatgatctatctccctctatgtgctgatgtggcacactgccatgttattttccagcaaataaaatgaataaaagagtgatgg |
397 |
Q |
| |
|
|||| ||| ||| |||||||||||| | || |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48044263 |
aaataagcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatgg |
48044175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2677 times since January 2019
Visitors: 4796