View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_high_1 (Length: 745)

Name: NF0733_high_1
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_high_1
NF0733_high_1
[»] chr7 (1 HSPs)
chr7 (21-605)||(40930806-40931390)
[»] chr6 (2 HSPs)
chr6 (216-602)||(33808134-33808514)
chr6 (603-656)||(33808542-33808595)
[»] chr5 (1 HSPs)
chr5 (30-133)||(8278775-8278877)


Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 21 - 605
Target Start/End: Complemental strand, 40931390 - 40930806
Alignment:
Q  21 aatatcaagtatcaactactttttcctaaataatgaatatggaaacgataatttacaggagatggaaagtggcaaaatttatacctctccaaattgtcgt 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  40931390 aatatcaagtatcaactactttttcctaaataatgaatatggaaacgataatttactggagatggaaagtggcaaaatttttacctctccaaattgtcgt 40931291  T
Q  121 tctatccttcccacgacatttaaaaaatggannnnnnngagaacttagtttccgttttctctcgccgccgtaaatgacatcgaatcactgcaccaccgtc 220  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  40931290 tctatccttcccacgacatttaaaaaatggatttttttgagaacttagtttccgttttatcttgccgccgtaaatgacatcgaatcactgcaccaccgtc 40931191  T
Q  221 tcagtcctttctcgacgaaatcgttacttcacgttgacattgacaaggctttcgccacttacgtcatataaagttttcacctttcaaccttgtaaacgtc 320  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||| ||||||||||||    
T  40931190 tcagtcctttctctacgaaatcgttacttcacgttgacattgacaaggctttcgccgcttccgtcacatatagttttcacctttcaaacttgtaaacgtc 40931091  T
Q  321 ctccgcgaagccgacgccaatcaagacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattggattagt 420  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  40931090 ctccgcgaagccgacgccgatcaaaacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattcgatcagt 40930991  T
Q  421 tgttgtagcagtttcaacaatatgttttcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcggagat 520  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40930990 tgttgtagcagtttctacaatatgttatcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcggagat 40930891  T
Q  521 gaacaacttcttaaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggaggtg 605  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40930890 gaacagcttcttaaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggaggtg 40930806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 216 - 602
Target Start/End: Original strand, 33808134 - 33808514
Alignment:
Q  216 ccgtctcagtcctttctcgacgaaatcgttacttcacgttgacattgacaaggctttcgccacttacgtcatataaagttttcacctttcaaccttgtaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||| ||  ||||| |||||||||  |||||||||||||||||    
T  33808134 ccgtctcagtcctttctcgacgaaatcgttacttcacgttga------caaggctttcgccgctgccgtcacataaagtttcaacctttcaaccttgtaa 33808227  T
Q  316 acgtcctccgcgaagccgacgccaatcaagacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattgga 415  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33808228 acgtcctccgcgaagccgacgccgatcaagacggtggtagcgcgataattcatggtttcatctctaaatcaattgaatttctgtttggatctagattcga 33808327  T
Q  416 ttagttgttgtagcagtttcaacaatatgttttcgccgctgttttgaagtttctgtttggatctagatttaatcagttgctggagcagtttttgtaagcg 515  Q
    | |||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808328 tcagttgttgtagcagtttctacaatatgttatcgccactgttttgaagattctgtttggatctagatttaatcagttgctggagcagtttttgtaagcg 33808427  T
Q  516 gagatgaacaacttcttaaccgctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggag 602  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808428 gagatgaatgacttcttaacggctggagaatgcgccggcgtaaaaaacaccttaagcttgaacggaagatggtggttttcgccggag 33808514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 603 - 656
Target Start/End: Original strand, 33808542 - 33808595
Alignment:
Q  603 gtgcaggttaagaagtagcaatacaatttacgatttgtaaagagatggtgattt 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808542 gtgcaggttaagaagtagcaatacaatttacgatttgtaaagagatggtgattt 33808595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 8278775 - 8278877
Alignment:
Q  30 tatcaactactttttcctaaataatgaatatggaaacgataatttacaggagatggaaagtggcaaaatttatacctctccaaattgtcgttctatcctt 129  Q
    |||||||||| |||||||||||||||| ||| |||| || | ||||  ||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  8278775 tatcaactacattttcctaaataatgattattgaaatgaca-tttattggagatggaaagtggcaaaatttctacctctccaaattgtcattctgtcctt 8278873  T
Q  130 ccca 133  Q
    ||||    
T  8278874 ccca 8278877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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