View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_high_12 (Length: 517)
Name: NF0733_high_12
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 23 - 507
Target Start/End: Original strand, 47944467 - 47944978
Alignment:
| Q |
23 |
atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcatgaaacacggtggaagttctaatccagctttatcacaaagatca |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47944467 |
atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcataaaacacggtggaagttctaatccagctttatcacaaagatca |
47944566 |
T |
|
| Q |
123 |
attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaccatcgtta------ccattgaattcagaattttcca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |
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|
| T |
47944567 |
attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaacatcgttaaaattaccattaaattcagaattttcca |
47944666 |
T |
|
| Q |
217 |
gcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccatagacattcacaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47944667 |
gcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccatagacattcacaaa |
47944766 |
T |
|
| Q |
317 |
attccctaaagtctgaattttcaaattcacagcatgagatgagccattcgtaagaatctcaggaagagtatacctcaaagatatcattgat--------- |
407 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47944767 |
attccctaaagtctgaattttcaatatcacagcatgagatgaaccattggtaagaatctcaggaagagtatacctcaaagatatcattgatgaagatgaa |
47944866 |
T |
|
| Q |
408 |
------------gaagaagaagaagaaggagacatatcattaacaagattagagcaactaagcgccagacccgaaacctcgtccacacgaacaaacccag |
495 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
47944867 |
gaagaagaagaagaagaagaagaagaagaagacatatcatcaacaagattagagcaactaatcgccatacccgaaacctcgtccacacgaacaaacccag |
47944966 |
T |
|
| Q |
496 |
attcaagaataa |
507 |
Q |
| |
|
|||||||||||| |
|
|
| T |
47944967 |
attcaagaataa |
47944978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 23 - 415
Target Start/End: Complemental strand, 20600420 - 20600013
Alignment:
| Q |
23 |
atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcatgaaacacggtggaagttctaatccagctttatcacaaagatca |
122 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||| ||||| || || | ||| ||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
20600420 |
atcatcaccaggaagatactcaaatattacgagcttaagttccattgggaggctcataaaacaaggtggaagaatcaatccagctttatcacaaagatca |
20600321 |
T |
|
| Q |
123 |
attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatct------ccaccatcgttacca------ttgaattcagaat |
210 |
Q |
| |
|
||||| ||||| |||||||||| ||| |||||||||||||||||||| ||||||| |||| ||| || | ||| || || ||||||||| |
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|
| T |
20600320 |
attaaaagtggaaatgcaagcctatcgttcactatcttccacaattccaaaacttcatctttatcaccatcaacattaacacaagcattagattcagaat |
20600221 |
T |
|
| Q |
211 |
tttccagcatca---attctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccatagac |
307 |
Q |
| |
|
|| || || || | ||||||||||| ||||||||| ||||||||||||||||| |||| || ||||||||| |||||||| ||||||||||||| || |
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|
| T |
20600220 |
ttgacatcagcagaaactctaaaggcttggcaaatctacatttatctaaataaaccatatgtacacttgacccaacatcatcatacaatgaaccataaac |
20600121 |
T |
|
| Q |
308 |
attcacaaaattccctaaagtctgaattttcaaattcacagcatgagatgagccattcgtaagaatctcaggaagagtatacctcaaagatatcattgat |
407 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
20600120 |
attcacaaaatgccctaatgtctgaattttcaaattcaaagaatgagatgaaccattagtaagaatctcaggaagagtatacctcaaggatatcattgaa |
20600021 |
T |
|
| Q |
408 |
gaagaaga |
415 |
Q |
| |
|
|||||||| |
|
|
| T |
20600020 |
gaagaaga |
20600013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 23 - 415
Target Start/End: Complemental strand, 6134237 - 6133833
Alignment:
| Q |
23 |
atcatcaccgggaagatactcaaatatcagcagcttaagctccatcggaagacgcatgaaacacggtggaagttctaatccagctttatcacaaagatca |
122 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||| ||||| || || | ||| ||||| |||||||| | ||||||||||||||||||||||| |
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|
| T |
6134237 |
atcatcaccaggaagatactcaaatattaagagcttaagttccattgggaggctcataaaacatggtggaagattcaatccagctttatcacaaagatcc |
6134138 |
T |
|
| Q |
123 |
attaatagtggcaatgcaagcccatctttcactatcttccacaattcaaaaactttatctccaccatcgttaccattgaa------------ttcagaat |
210 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||||||||||||||||| | || | || |||| ||| |||| || |||| ||| |
|
|
| T |
6134137 |
attaaaagtggcaatgcaagcctatcattcactatcttccacaattcaaaaacctcattttcatcatcattaacattaaaactagcaatagattcaaaat |
6134038 |
T |
|
| Q |
211 |
tttccagcatcaattctaaaggcttagcaaatctagatttatctaaataaaccctatgcacccttgacccagcatcatcacacaatgaaccatagacatt |
310 |
Q |
| |
|
|| ||||| || | ||||||||| | ||||||| |||||||||||||||||||||| || |||||||| |||||||| ||||||||||||| || || |
|
|
| T |
6134037 |
ttgatagcataaactttaaaggcttggaaaatctatatttatctaaataaaccctatgtacatttgacccaacatcatcatacaatgaaccataaacgtt |
6133938 |
T |
|
| Q |
311 |
cacaaaattccctaaagtctgaattttcaaattcacagcatgagatgagccattcgtaagaatctcaggaagagtatacctcaaagatatcattgatgaa |
410 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| | ||||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
6133937 |
cacaaaatgccctaatgtctgaattttcaaattcaatgaatgaggtgaaccattagtaagaatctcaggaagagtatacctcaaacatatcattgaagaa |
6133838 |
T |
|
| Q |
411 |
gaaga |
415 |
Q |
| |
|
||||| |
|
|
| T |
6133837 |
gaaga |
6133833 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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