View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_high_14 (Length: 510)

Name: NF0733_high_14
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_high_14
NF0733_high_14
[»] chr8 (5 HSPs)
chr8 (267-510)||(9677602-9677844)
chr8 (267-495)||(9693357-9693585)
chr8 (73-239)||(9677870-9678041)
chr8 (325-370)||(30652024-30652069)
chr8 (188-216)||(9693594-9693622)
[»] chr4 (5 HSPs)
chr4 (277-491)||(35160435-35160649)
chr4 (277-489)||(35154044-35154256)
chr4 (323-488)||(15555032-15555197)
chr4 (362-489)||(37147414-37147541)
chr4 (325-370)||(16298996-16299041)
[»] chr3 (12 HSPs)
chr3 (320-481)||(46469649-46469810)
chr3 (320-475)||(5155227-5155382)
chr3 (323-482)||(46478252-46478411)
chr3 (395-495)||(47398294-47398394)
chr3 (302-493)||(4582480-4582671)
chr3 (322-480)||(16023908-16024066)
chr3 (406-495)||(47414938-47415027)
chr3 (304-393)||(51942045-51942134)
chr3 (398-482)||(46507113-46507197)
chr3 (377-487)||(46490048-46490158)
chr3 (380-487)||(46497368-46497475)
chr3 (377-477)||(45900912-45901012)
[»] chr6 (4 HSPs)
chr6 (325-476)||(16967863-16968014)
chr6 (7-72)||(2062720-2062785)
chr6 (14-72)||(2058297-2058355)
chr6 (25-72)||(2054339-2054386)
[»] chr2 (4 HSPs)
chr2 (342-494)||(20143500-20143652)
chr2 (320-448)||(20154383-20154511)
chr2 (342-494)||(20169858-20170010)
chr2 (325-370)||(39548117-39548162)
[»] chr1 (1 HSPs)
chr1 (325-370)||(33097480-33097525)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 267 - 510
Target Start/End: Complemental strand, 9677844 - 9677602
Alignment:
Q  267 tggctcaccttgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 366  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9677844 tggctcaccttgatcaatcaagcaccaaccatgcgaaagtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 9677745  T
Q  367 accattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgat 466  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9677744 accattgtctctccaagttgttctcagtatcatcgctgctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgat 9677645  T
Q  467 catctcaactccttcgtctctcatctcctctctgctcctcctca 510  Q
    ||||||||||||||||||||||||||||| |||| |||||||||    
T  9677644 catctcaactccttcgtctctcatctcctttctg-tcctcctca 9677602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 267 - 495
Target Start/End: Complemental strand, 9693585 - 9693357
Alignment:
Q  267 tggctcaccttgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttc 366  Q
    |||||||||||||| |||||||||||||| | |||||| ||||||||||  | |||||||||||||||||||||||||||||||| || |||||||||||    
T  9693585 tggctcaccttgatgaatcaagcaccaaccaagcgaaattttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttc 9693486  T
Q  367 accattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgat 466  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  9693485 accattgtctctccaagttgttctcagcatcatcgctgttggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgat 9693386  T
Q  467 catctcaactccttcgtctctcatctcct 495  Q
    |||||||||| ||| ||||||||||||||    
T  9693385 catctcaacttctttgtctctcatctcct 9693357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 73 - 239
Target Start/End: Complemental strand, 9678041 - 9677870
Alignment:
Q  73 ctagcaattagttaaagtttagtggtttactcgt------tttcatttatgcgttctgttaaatttcaattactgcattgttgtgttcctcatcgaagtg 166  Q
    ||||| ||||||||||||||||||||||||||||      ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9678041 ctagcgattagttaaagtttagtggtttactcgtgaaagttttcacttatgcgttctgttaaatttcaattactgcattgttgtgttcctcatggaagtg 9677942  T
Q  167 tttctctccctgtgattgcttttctggtacagttgaaaaatcaaaagaaggaaattaacaaacaatggttcgc 239  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9677941 tttctctccctgtgatt-cttttctggtacagttggaaaatcaaaagaaggaaattaacaaacaatggttcgc 9677870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 30652024 - 30652069
Alignment:
Q  325 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 370  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  30652024 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 30652069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 9693622 - 9693594
Alignment:
Q  188 ttctggtacagttgaaaaatcaaaagaag 216  Q
    |||||||||||||||||||||||||||||    
T  9693622 ttctggtacagttgaaaaatcaaaagaag 9693594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 277 - 491
Target Start/End: Original strand, 35160435 - 35160649
Alignment:
Q  277 tgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtct 376  Q
    |||| ||||||||| |||| |  |||||||||| |||||  | | ||||||||||||||| ||||||||||| || ||| |||| ||||| |||||||||    
T  35160435 tgatgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtct 35160534  T
Q  377 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 476  Q
    ||||||||||| ||||| || ||| ||| ||||||||||||| | || |||||||||||||| ||||||||||| ||||||||||  |||||||||||||    
T  35160535 ctccaagttgtgctcagcataatcactgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 35160634  T
Q  477 ccttcgtctctcatc 491  Q
    |||  ||||||||||    
T  35160635 cctcagtctctcatc 35160649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 277 - 489
Target Start/End: Original strand, 35154044 - 35154256
Alignment:
Q  277 tgatcaatcaagcaccaacaatgcgaaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtct 376  Q
    |||| ||||||||  |||| || ||||||||||||||||  | ||||||||||| |||||||| |||||||| || ||  |||| ||||| || ||||||    
T  35154044 tgatgaatcaagctgcaaccatacgaaagtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtct 35154143  T
Q  377 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 476  Q
    |||||||| || ||    |||||||||| ||||||||| ||| | || | ||||||||||||| |||||||||  |||||||||  | ||||||||||||    
T  35154144 ctccaagtagtgcttgcaatcatcgctgctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaact 35154243  T
Q  477 ccttcgtctctca 489  Q
    |||||||||||||    
T  35154244 ccttcgtctctca 35154256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 323 - 488
Target Start/End: Original strand, 15555032 - 15555197
Alignment:
Q  323 aaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtccta 422  Q
    |||||||||||||| ||| || |  |||||||| | || ||||||||  | ||  | |||||| ||||||| |||||||||| ||||||||||||| | |    
T  15555032 aaacatctcttctctaaacaacccaacaacaacattgtgttttcacctctctcgattcaagttattctcagcatcatcgctgctggctctgagggttcca 15555131  T
Q  423 ctcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctc 488  Q
    | || ||||| ||||||||||||||||| || ||||||||| |||| ||||||||| || ||||||    
T  15555132 cacagcaacaacttctcgacttcctccgctttaaatccatccatcaactcaactccgtcatctctc 15555197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 362 - 489
Target Start/End: Original strand, 37147414 - 37147541
Alignment:
Q  362 ttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatcca 461  Q
    ||||| || ||||| |||||||||||||| ||||| ||||||| ||||||  ||||||| || ||||||||  ||||||||||||||   || |||||||    
T  37147414 ttttcgcccttgtcgctccaagttgttctaagtattatcgctgctggctccaagggtcccacacaacaacaaattctcgacttcctcgactttaaatcca 37147513  T
Q  462 tcgatcatctcaactccttcgtctctca 489  Q
    || ||||| ||||||  ||||| |||||    
T  37147514 tcaatcatgtcaacttattcgtttctca 37147541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 16298996 - 16299041
Alignment:
Q  325 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 370  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  16298996 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 16299041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 320 - 481
Target Start/End: Original strand, 46469649 - 46469810
Alignment:
Q  320 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 419  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||| ||  |||| ||||||||| | ||||  ||  |||||| || |||||||||||    
T  46469649 gccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcactccaagttatgctcaacattgtcgctgctgcctctgagggtc 46469748  T
Q  420 ctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttc 481  Q
     ||| |||||||| |||||||| |||||||| | |||||||||||| |||||||||||||||    
T  46469749 gtacacaacaacaacttctcgaattcctccgttccaaatccatcgaccatctcaactccttc 46469810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 320 - 475
Target Start/End: Original strand, 5155227 - 5155382
Alignment:
Q  320 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 419  Q
    ||||||||||| ||||  ||||||| |||||| ||| | || ||||| ||| ||||||| |||||||| || || |||||||||| ||||||||||||||    
T  5155227 gccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtc 5155326  T
Q  420 ctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaac 475  Q
    | || ||||||||||||||||||||||||| || ||||||||  || |||||||||    
T  5155327 ccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaac 5155382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 323 - 482
Target Start/End: Original strand, 46478252 - 46478411
Alignment:
Q  323 aaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtccta 422  Q
    |||||||||||||| |||||||||||||||||| |||| ||||| ||| | || ||||||||||| || ||||| ||||||  ||| ||||||||||| |    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtccca 46478351  T
Q  423 ctcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcg 482  Q
    |||||||||| ||| || ||||||| |  | |||||||| |||||||||||||| |||||    
T  46478352 ctcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcg 46478411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 495
Target Start/End: Complemental strand, 47398394 - 47398294
Alignment:
Q  395 atcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 494  Q
    |||| ||||| ||||||||||||||| || |||||| ||||||||||||||||  ||| ||| ||||  || |||||||||||||||| |||||||||||    
T  47398394 atcaacgctgctggctctgagggtcccacacaacaagagcttctcgacttccttgggtccaagtccactgaacatctcaactccttcgcctctcatctcc 47398295  T
Q  495 t 495  Q
    |    
T  47398294 t 47398294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 493
Target Start/End: Complemental strand, 4582671 - 4582480
Alignment:
Q  302 aaagtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcg 401  Q
    |||||||||||||   | |||||| |||||||||||||||||||||| || ||| | || ||||| ||| | || ||||||||||  ||||| || ||||    
T  4582671 aaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagcatgatcg 4582572  T
Q  402 ctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctc 493  Q
    ||| ||||||||| || || ||   | ||||||||||||||||||| |  | |||||| |  ||||||||||||||||| |  |||||||||    
T  4582571 ctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaactcctttgcttctcatctc 4582480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 480
Target Start/End: Original strand, 16023908 - 16024066
Alignment:
Q  322 caaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcct 421  Q
    |||||||||||| |||||| |||||||||| ||| || | ||||| ||  | || || ||||||||||||||  | ||||||| ||| || ||||| ||     
T  16023908 caaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttctcagccttatcgctgctggatccgagggaccg 16024007  T
Q  422 actcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactcctt 480  Q
    || ||||||||||||||| |||||||||| | | |||| | | || |||||||||||||    
T  16024008 acacaacaacagcttctccacttcctccgctccgaatctaccaataatctcaactcctt 16024066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 495
Target Start/End: Complemental strand, 47415027 - 47414938
Alignment:
Q  406 tggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcct 495  Q
    ||||||||||||| | || || ||| ||||||||||||||||| | |  |||||||| ||||||||||||||||| | ||||||||||||    
T  47415027 tggctctgagggtaccacacatcaaaagcttctcgacttcctcggctcaaaatccattgatcatctcaactcctttgcctctcatctcct 47414938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 393
Target Start/End: Original strand, 51942045 - 51942134
Alignment:
Q  304 agtttccctcacggtagccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcag 393  Q
    |||||||||||   | ||||||||| | ||||||||| ||||||| |||||| |||||||||| ||||||||||| |||||||| |||||    
T  51942045 agtttccctcagaatcgccaaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgccattgtctctgcaagttgtgctcag 51942134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 482
Target Start/End: Complemental strand, 46507197 - 46507113
Alignment:
Q  398 atcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactccttcg 482  Q
    |||||||  |||||||||||||| |||||||||||| |||| ||||||||| | | |||||| ||| ||||||||||||| ||||    
T  46507197 atcgctgccggctctgagggtcccactcaacaacagattcttgacttcctctgctccaaatctatccatcatctcaactcattcg 46507113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 487
Target Start/End: Original strand, 46490048 - 46490158
Alignment:
Q  377 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 476  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||  | || |||||||||||||| ||||||||||  |  || |||| |||||| |||||||    
T  46490048 ctccaagttgtactcagcatcatcgctgctggctctgacggctccacacaacaacagcttcttgacttcctccaatctaactccaccgatcaactcaact 46490147  T
Q  477 ccttcgtctct 487  Q
    | |||| ||||    
T  46490148 cattcgcctct 46490158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 380 - 487
Target Start/End: Original strand, 46497368 - 46497475
Alignment:
Q  380 caagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaactcct 479  Q
    |||||||| || || |||||||||  |||||| ||||| || || |||||||| |||||| |||||||||  | |||||||| | |||| ||||||||||    
T  46497368 caagttgtgctaagcatcatcgctactggctccgagggccccacacaacaacaacttctcaacttcctccaatccaaatccacctatcaactcaactcct 46497467  T
Q  480 tcgtctct 487  Q
    ||| ||||    
T  46497468 tcgcctct 46497475  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 45900912 - 45901012
Alignment:
Q  377 ctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 476  Q
    ||||||||| ||||||| ||||| |||| |||  |||||||||| || ||||| |||||| || |||||||||  ||  |||||| ||| ||||||||||    
T  45900912 ctccaagttattctcagcatcattgctgctggtgctgagggtccaacacaacagcagcttatccacttcctccaatttgaatccaccgaccatctcaact 45901011  T
Q  477 c 477  Q
    |    
T  45901012 c 45901012  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 325 - 476
Target Start/End: Complemental strand, 16968014 - 16967863
Alignment:
Q  325 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctact 424  Q
    |||||| ||||| |||||||| ||||||||| |||| ||||||||| | || |||||||||||  | || || |||||| |||| ||||||||||| |||    
T  16968014 acatctattctccaaagaatcggacaacaacatcgtgttttcaccactctcactccaagttgtgttaagcataatcgcttttggttctgagggtcccact 16967915  T
Q  425 caacaacagcttctcgacttcctccggttcaaatccatcgatcatctcaact 476  Q
    |||||||| ||| || | |||||||  | |||||||||||||||||||||||    
T  16967914 caacaacaacttttcaaattcctccaatccaaatccatcgatcatctcaact 16967863  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 2062720 - 2062785
Alignment:
Q  7 gtttctacattaacaagaaaatgaaatttacatttttcttatcatatgttattggttttgcaacag 72  Q
    |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||    
T  2062720 gtttctacattaacaagaaaatgaaatttacaattttcttataacatgttattggttttgcaacag 2062785  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 2058297 - 2058355
Alignment:
Q  14 cattaacaagaaaatgaaatttacatttttcttatcatatgttattggttttgcaacag 72  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  2058297 cattaacaagaaaatgaaatttacaattttcttataatatgttattggttttgcaacag 2058355  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 2054339 - 2054386
Alignment:
Q  25 aaatgaaatttacatttttcttatcatatgttattggttttgcaacag 72  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  2054339 aaatgaaatttacaattttcttatcatatgttattggttttgcaacag 2054386  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 494
Target Start/End: Original strand, 20143500 - 20143652
Alignment:
Q  342 aatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcga 441  Q
    |||||||||| ||| |||| ||||| ||| | || |||||| |||| |||||  | ||||||| ||| ||||| | ||| || |||||||| ||| ||||    
T  20143500 aatcagacaagaacatcgtgttttcgccactatcactccaaattgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttgtcga 20143599  T
Q  442 cttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 494  Q
    ||||||||| |||||||||| | ||||||| |||||||||  |||| ||||||    
T  20143600 cttcctccgcttcaaatccaccaatcatcttaactccttcacctcttatctcc 20143652  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 448
Target Start/End: Original strand, 20154383 - 20154511
Alignment:
Q  320 gccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtc 419  Q
    ||||||||||| ||||  ||| |||||||||| ||| | || ||||| ||| |||| |||||||||||  ||||  ||| ||||| ||||||||| ||||    
T  20154383 gccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaaggtc 20154482  T
Q  420 ctactcaacaacagcttctcgacttcctc 448  Q
    | || |||||||||||| |||||||||||    
T  20154483 ccacacaacaacagcttgtcgacttcctc 20154511  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 494
Target Start/End: Complemental strand, 20170010 - 20169858
Alignment:
Q  342 aatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgttggctctgagggtcctactcaacaacagcttctcga 441  Q
    |||||||||| |||||||| ||||||||| | || || ||| |||| |||||  | || |||  ||| ||||| ||||| ||  ||||||| ||| ||||    
T  20170010 aatcagacaaaaacgtcgtgttttcaccactatcacttcaaattgtgctcagccttattgctactggttctgaaggtcccacaaaacaacaacttgtcga 20169911  T
Q  442 cttcctccggttcaaatccatcgatcatctcaactccttcgtctctcatctcc 494  Q
    ||||||||| |||||||||| | |||||||||| ||||||| |||| ||||||    
T  20169910 cttcctccgtttcaaatccaccaatcatctcaattccttcgcctcttatctcc 20169858  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 39548117 - 39548162
Alignment:
Q  325 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 370  Q
    |||||||||||| |||||||||||||||||| || | |||||||||    
T  39548117 acatctcttctccaaagaatcagacaacaacatcatgttttcacca 39548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 33097480 - 33097525
Alignment:
Q  325 acatctcttctcaaaagaatcagacaacaacgtcgtcttttcacca 370  Q
    |||||||||||| |||||||||||||||||| |||| |||||||||    
T  33097480 acatctcttctccaaagaatcagacaacaacatcgtgttttcacca 33097525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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