View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_high_16 (Length: 494)
Name: NF0733_high_16
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 28878367 - 28878216
Alignment:
| Q |
79 |
tctccaacaatatactttgcctataaacccctctacacaaggcaacaaaattgtagaagaaataagcaaaagctcaatctatgaatggaatctataacaa |
178 |
Q |
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| T |
28878367 |
tctccatcaatatcctttgcctataaacccctctacacaaggcaacaaaattgtagaagaaataagcaaaagctcaatctctgaatggaatctataacaa |
28878268 |
T |
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| Q |
179 |
ggacattttgccagaaataatagtcctttgcatttaagaatataagtagaac |
230 |
Q |
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| T |
28878267 |
ggacattttgccagaaataatagtcctttgcatttaagaatataagtagaac |
28878216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 257 - 399
Target Start/End: Complemental strand, 28878189 - 28878051
Alignment:
| Q |
257 |
tggtcaaagtaagatgtcaatgtgattgtgtttgtagttacataaaatgttgtttttgtaaaattaattaagattgtgtttttcacnnnnnnngggacaa |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
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| T |
28878189 |
tggtcaaagtaagatgtcaatgtgattgtgtttgtagttacataaaatgttgtttttgcaa----aattaagattgtgtttttcac-ttttttgggacaa |
28878095 |
T |
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| Q |
357 |
aaattga-tttgaacaaattgatttttagttaaaagctaagcac |
399 |
Q |
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| T |
28878094 |
aaattgattttgaacaaattgatttttagttaaaagctaagcac |
28878051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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