View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_high_21 (Length: 434)
Name: NF0733_high_21
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 410
Target Start/End: Original strand, 30059170 - 30059550
Alignment:
| Q |
30 |
ccatcttcatcaatagacagtattcagtaatgggtattgcccaatttctcgacaaaatttcagctttatcaacttctgaatcttcaggatcgttccatat |
129 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30059170 |
ccatcttcatctatagacagtattcagtaatgggtattgcccaatttctcgaaaaaatttcagctttatcaacttctgaatcttcaggatcgttgcatat |
30059269 |
T |
|
| Q |
130 |
tctttccagcacgattctgggattgtctgtattggaacttgcagcaatatgcgtgaacttgactcttgttctgttgtttctctttgttgtctctgttaga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30059270 |
tctttccagcacgattctgggattgtctgtattggaacttgcagcaatatgcgtgaacttgactcttgttctgttgtttctctttgttgtctctgttaga |
30059369 |
T |
|
| Q |
230 |
aagattcttgtgtacaagagaattggaatcgttaaggacagtactacctcaaatgatagtccaatttgcagtgttattgatagagaaacgagtgatgttt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30059370 |
aagattcttgtgtacaagagaattggaatcgttaaggacagtactacctcaaatgatagtccaatttgcagtgttattgatagagaaacgagtgatgttt |
30059469 |
T |
|
| Q |
330 |
caataggtgtttggttcaagttatctgtgttgtcttgtttctatgttttgtttgtggaagttttagtgttgagttttgatg |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30059470 |
caataggtgtttggttcaagttatctgtgttgtcttgtttctatgttttgtttgtggaagttttagtgttgagttttgatg |
30059550 |
T |
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