View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_high_22 (Length: 414)
Name: NF0733_high_22
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_22 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 11630420 - 11630007
Alignment:
| Q |
1 |
tggatcatgtttcaaatagctccatttcagaaataacctggccagggtatgaagtgaaggtatccagcatggtaactcttttagcctccctgacaaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11630420 |
tggatcatgtttcaaatagctccatttcagaaataacctggccaggttatgaagtgaaggtatccagcatggtaactcttttagcctccctgacaaatac |
11630321 |
T |
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| Q |
101 |
aatcgttgaagaaatggagggggtgtagaaagagatgtcaaatcaataactttattctcaccctcagaagtaacagagagtgcagaaagactaattaatt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
11630320 |
aatcgttgaagaaatggaggcggtgtagaaagagatgtcaaatcaataactttattctcaccctcagaagtaacagagagtgcagaaagactgactaatt |
11630221 |
T |
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| Q |
201 |
tttcaatgcagaaacataagtccttcccatcttcctctctgagtctcatgatgcctaaccttcttagttggcttagctcctttaactgtcttattatcat |
300 |
Q |
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| T |
11630220 |
tttcaatgcagaaacagaaatccttcccatcttcctctctgagtctcatgatgcctaaccttcttagttggctcagctcctttaaatgtcttattatcat |
11630121 |
T |
|
| Q |
301 |
tccgcatcctttgtttgcctctacaaaacaaagcttttgcagtgactgtaagtttcctatttcaagcggggctttaaaaccatatttggagtgaaattgt |
400 |
Q |
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| T |
11630120 |
tctgcatcctttgtttgcctctacaaaacaaagcttttgtagtgactgtaaatttcctatttcaaggggggctttaaaaccatatttggagtgaaattgt |
11630021 |
T |
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| Q |
401 |
gcgtaaccttcgac |
414 |
Q |
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| T |
11630020 |
gcgtaaccttcgac |
11630007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 11652728 - 11652318
Alignment:
| Q |
1 |
tggatcatgtttcaaatagctccatttcagaaataacctggccagggtatgaagtgaaggtatccagcatggtaactcttttagcctccctgacaaatac |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| | ||||||||||| ||| |||||||| |||||| |
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| T |
11652728 |
tggatcatgtttcaaacagctccatttcagaaataacctggccagattatgaagagaaggtatccaacttggtaactcttgtagtctccctgataaatac |
11652629 |
T |
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| Q |
101 |
aatcgttgaagaaatggagggggtgtagaaagagatgtcaaatcaataactttattctcaccctcagaagtaacagagagtgcagaaagactaattaatt |
200 |
Q |
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|||| ||||||||||||||||||| || |||| |||||||||||||||| ||||| ||||||||||||||||||||| | ||| | |||||| | |||| |
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| T |
11652628 |
aatctttgaagaaatggagggggtttacaaagggatgtcaaatcaataaatttatcctcaccctcagaagtaacagataaggcacacagactagtcaatt |
11652529 |
T |
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| Q |
201 |
tttcaatgcagaaacataagtccttcccatcttcctctctgagtctcatgatgcctaaccttcttagttggcttagctcctttaactgtcttattatcat |
300 |
Q |
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|||| ||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || || ||| |||||||||||||| |
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| T |
11652528 |
tttcgatgcaccaacaaaattccttcccatcttcctctctgagtctcatgatgcctaatcttcttagctggcttaacttctgtaattgtcttattatcat |
11652429 |
T |
|
| Q |
301 |
tccgcatcctttgtttgcctctacaaaacaaagcttttgcagtgactgtaagtttcctatttcaagcggggctttaaaaccatatttggagtgaaattgt |
400 |
Q |
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|| || |||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| || || |||||||||||||| ||||| |||||| |
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| T |
11652428 |
gccacaaccttggtttgcctctacaaaacaaagcttttgcagtgactgtaatttacctatttcaagaggtgccttaaaaccatatttcgagtggaattgt |
11652329 |
T |
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| Q |
401 |
gcgtaaccttc |
411 |
Q |
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|| |||||||| |
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| T |
11652328 |
gcataaccttc |
11652318 |
T |
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