View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_high_29 (Length: 348)
Name: NF0733_high_29
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 27644056 - 27644302
Alignment:
| Q |
9 |
gagatgaaataagattttagagcttgtaatttagtaattgtcacataa-atcagctaggagcattagtttgtgcaaataatacgcacaaggatcctgatc |
107 |
Q |
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| T |
27644056 |
gagatgaaataagattttagagcttgtaatttagtaattgtcacataagatcagctaggagcattagtttgtgcaaataatacgcacaaggatcctgatc |
27644155 |
T |
|
| Q |
108 |
attgaacatggatttttagttttctgtgacttgagaatctttaggatgtcatgattatttaatcttttcctttccccttttttctaatttgcttttggaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27644156 |
attgaacatggatttttagttttctgtgacttgagaatctttaggatgtcatgattatttaatcttttcctttccccttttttttaatttgcttttggaa |
27644255 |
T |
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| Q |
208 |
gaagaaacaatcatacattgatttgtttgcgttattaggcatagttt |
254 |
Q |
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| T |
27644256 |
gaagaaacaatcatacattgatttgtttgcgttattaggcatagttt |
27644302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 27664795 - 27664924
Alignment:
| Q |
9 |
gagatgaaataagattttagagcttgtaatttagtaattgtcacataa-atcagctaggagcattagtttgtgcaaataatacgcacaaggatcctgatc |
107 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||||||||| |||| |||||||| || |||||||| ||||||||||| |||||| |||||| | | |
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| T |
27664795 |
gagatgaaataacattctagagcttgtattttagtaattgtcaaataatatcagctatgaaaattagtttttgcaaataatatgcacaacgatcctaacc |
27664894 |
T |
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| Q |
108 |
attgaacatggatttttagttttctgtgac |
137 |
Q |
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| T |
27664895 |
attgaacatggatttttagttttatgtgac |
27664924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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