View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_high_42 (Length: 289)
Name: NF0733_high_42
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 83 - 260
Target Start/End: Complemental strand, 2062897 - 2062720
Alignment:
| Q |
83 |
ataccgtaggaatgtgttggatgttgaatgagtgaaagcattcccttagctgcaaagcatcatcacacaagctcgataaattagggttgctgattttcca |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
2062897 |
ataccgtaggaatgtgttggatgttgaatgagtgaaagcattcccttagctgcaaagcatcatcacacaagctcaataaattcgggttgctgattttcca |
2062798 |
T |
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| Q |
183 |
tgaacccaaaaactgttgcaaaaccaataacatatgataagaaaaatgtaaatttcattttcttgttaatgtagaaac |
260 |
Q |
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| T |
2062797 |
tgaacccaaaaactgttgcaaaaccaataacatgttataagaaaattgtaaatttcattttcttgttaatgtagaaac |
2062720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 66 - 253
Target Start/End: Complemental strand, 2058484 - 2058297
Alignment:
| Q |
66 |
accaaattactaaataaataccgtaggaatgtgttggatgttgaatgagtgaaagcattcccttagctgcaaagcatcatcacacaagctcgataaatta |
165 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2058484 |
accaaatttctaaataaataccgtaggaatgagttggatgttgaatgagttaaaacattcccttagctgcaaagcatcatcacacaagctcaataaatta |
2058385 |
T |
|
| Q |
166 |
gggttgctgattttccatgaacccaaaaactgttgcaaaaccaataacatatgataagaaaaatgtaaatttcattttcttgttaatg |
253 |
Q |
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| T |
2058384 |
gggttcatgattttccatgaacccaaaaactgttgcaaaaccaataacatattataagaaaattgtaaatttcattttcttgttaatg |
2058297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 82 - 242
Target Start/End: Complemental strand, 2054499 - 2054339
Alignment:
| Q |
82 |
aataccgtaggaatgtgttggatgttgaatgagtgaaagcattcccttagctgcaaagcatcatcacacaagctcgataaattagggttgctgattttcc |
181 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||| |||| | ||||||||||| |||| |||||| || |||||| ||||| ||||||||| |
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| T |
2054499 |
aataccctaggaatgtgttggatgctgaatgagtgaaagctttccttcagctgcaaagcctcattgcacaagttccataaatactggttgttgattttcc |
2054400 |
T |
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| Q |
182 |
atgaacccaaaaactgttgcaaaaccaataacatatgataagaaaaatgtaaatttcattt |
242 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2054399 |
atgaacccagaaactgttgcaaaaccaataacatatgataagaaaattgtaaatttcattt |
2054339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 2062950 - 2062896
Alignment:
| Q |
1 |
tgtgtaaacatagattgaacaaaatatataacttgttagggtgctaattttttat |
55 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2062950 |
tgtgtagacatagattgaacaaaatatataacttgttaggatgctaattttttat |
2062896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 232
Target Start/End: Complemental strand, 2048264 - 2048106
Alignment:
| Q |
74 |
actaaataaataccgtaggaatgtgttggatgttgaatgagtgaaagcattcccttagctgcaaagcatcatcacacaagctcgataaattagggttgct |
173 |
Q |
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| T |
2048264 |
actaaataaataccctaggaatgtgttgaatctggagtgagtgaaagttatctgctagctccaaagcctcatcgcataagttccttaaacgcgggttgtt |
2048165 |
T |
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| Q |
174 |
gattttccatgaacccaaaaactgttgcaaaaccaataacatatgataagaaaaatgta |
232 |
Q |
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| T |
2048164 |
gattttccatatacccagaaactgttgcaaaaccaataacaagtgatacaaaaaatgta |
2048106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 2054675 - 2054613
Alignment:
| Q |
8 |
acatagattgaacaaaatatataacttgttagggtgct-aattttttattcaaggtggaacca |
69 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||||| |
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|
| T |
2054675 |
acatagattgaacaaaatatataactagttaggatgctgatttttttattcaaggtggaacca |
2054613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 178
Target Start/End: Complemental strand, 2042340 - 2042231
Alignment:
| Q |
69 |
aaattactaaataaataccgtaggaatgtgttggatgttgaatgagtgaaagcattcccttagctgcaaagcatcatcacacaagctcgataaattaggg |
168 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |||| ||||||||||| | | ||||||||||| || ||||| |||||| ||||| ||| |
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| T |
2042340 |
aaatcactaaataaataccctaggaatgtgttggatgctgaacgagtgaaagcaattgatgagctgcaaagcctcttcacataagctctttaaatgtggg |
2042241 |
T |
|
| Q |
169 |
ttgctgattt |
178 |
Q |
| |
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||| |||||| |
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| T |
2042240 |
ttgttgattt |
2042231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 2088712 - 2088570
Alignment:
| Q |
75 |
ctaaataaataccgtaggaatgtgttggatgttgaatgagtgaaagcattcccttagctgcaaagcatcatcacacaagctcgataaattagggttgctg |
174 |
Q |
| |
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||||||||||||| | |||||||||||||| || ||||||||||| || | |||| |||||| || | ||| |||||| |||||| | ||| | |
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| T |
2088712 |
ctaaataaataccctgcgaatgtgttggatggtgcatgagtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtag |
2088613 |
T |
|
| Q |
175 |
attttccatgaacccaaaaactgttgcaaaaccaataacatat |
217 |
Q |
| |
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|| || ||||||||| |||||||||||||||||||||||||| |
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| T |
2088612 |
atgttacatgaacccttaaactgttgcaaaaccaataacatat |
2088570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 39183031 - 39183084
Alignment:
| Q |
159 |
taaattagggttgctgattttccatgaacccaaaaactgttgcaaaaccaataa |
212 |
Q |
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|||||| |||||| ||| |||||| |||||| ||||||||||||||||||||| |
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| T |
39183031 |
taaatttgggttgttgactttccaggaaccctcaaactgttgcaaaaccaataa |
39183084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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