View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_high_43 (Length: 285)
Name: NF0733_high_43
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_43 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 26194155 - 26194405
Alignment:
| Q |
7 |
tccaagaatatgggcatatttcttttgcttcatccacagtcaactgcatgattacaaatgaaagaaatattaggatactaacaaaaaataataatagtaa |
106 |
Q |
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| T |
26194155 |
tccaagcatatgggcatatttcttttgcttcatccacagtcaactgcatgattacaaatgaaagaaatattaggatactaacaaaaaataataatagtaa |
26194254 |
T |
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| Q |
107 |
agaaagaatgatacttaattaagatattgcaatttgcaagatgaattgacatttgagtatgacacaaaaatttataaatgccacttgattaggatcaagg |
206 |
Q |
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| T |
26194255 |
agaaagaatgatacttaattaagatattgcaatttgcaagatgaattgacatttgagtatgacacaaaaatttataaatgccacatgattaggatcaagg |
26194354 |
T |
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| Q |
207 |
ttttgaaaaacatatatgcaacctcaatctgcgccgcgacgtcaggatttt |
257 |
Q |
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| T |
26194355 |
ttttgaaaaacatatatgcaacctcaatctgcgccgcgacgtcaggatttt |
26194405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 26194447 - 26194510
Alignment:
| Q |
196 |
taggatcaaggttttgaaaaacatatatgcaacctcaatctgcgccgcgacgtcaggattttga |
259 |
Q |
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| T |
26194447 |
taggatcaaggttttgaaaaacatatatgcaacatcaatctgcgctgcgacatcaagattttga |
26194510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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