View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_high_45 (Length: 271)
Name: NF0733_high_45
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 14458641 - 14458903
Alignment:
| Q |
1 |
ttaagttattggatttctatgaaacccttgccatctttgttaatctttgttattctctctaattatctatattgttaacattatgaaccatccaagggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14458641 |
ttaagttattggatttctatgaaacccttgccgtctttgttaatctttgttattctctctaattatctatattgttaacattatgaaccatccaagggaa |
14458740 |
T |
|
| Q |
101 |
agataaaagtgttcaagattcaaaaaattgttcataatcatcgagcatgctgtaacttgatcttttattctacctcttgacgctacaataaaatctgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14458741 |
agataaaagtgttcaagattcaaaaaattgttcataatcatcgagcatgctgtaacttgatcttttattctacctcttgacgctacaataaaatctgaaa |
14458840 |
T |
|
| Q |
201 |
tgtttaattaataaagaatagcttgttctgtaacttgtgatgttattcctacttatattgttg |
263 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14458841 |
tgtttaattaataaagaatagcttgttctcaaacttgtgatgttattcctacttatattgttg |
14458903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 223
Target Start/End: Complemental strand, 14492818 - 14492669
Alignment:
| Q |
82 |
tatgaaccatccaagggaaagataaaagtgttcaagattc------aaaaaattgttcata--atcatcgagcatgctgtaacttgatcttttattctac |
173 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| | |||||| |||||| ||||||||||||| || |||||||||||||| ||| | |
|
|
| T |
14492818 |
tatgaaccatccaagggaaagataaaaatgttcaagatccaaaaaaaaaaaaaaattcataagatcatcgagcatgatggaacttgatcttttagtcttc |
14492719 |
T |
|
| Q |
174 |
ctcttgacgctacaataaaatctgaaatgtttaattaataaagaatagct |
223 |
Q |
| |
|
||||| | | |||||||||||| ||||||| ||||||| ||| ||||| |
|
|
| T |
14492718 |
ttcttgcctttccaataaaatctgtaatgtttgattaatatagagtagct |
14492669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 14462184 - 14462270
Alignment:
| Q |
137 |
atcatcgagcatgctgtaacttgatcttttattctacctcttgacgctacaataaaatctgaaatgtttaattaataaagaatagct |
223 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||| ||||| | ||||||||||| || ||||||| ||||||| | ||||||| |
|
|
| T |
14462184 |
atcatcgagcatgatggaacttgatcttttactcttattcttgcctttacaataaaatatgtaatgtttgattaatataaaatagct |
14462270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 5237359 - 5237222
Alignment:
| Q |
81 |
ttatgaaccatccaagggaaagataaaagtgttcaagattcaaaaaat---tgttcataa--tcatcgagcatgctgtaacttgatcttttattctacct |
175 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||| | |||| || |||||||||||| || |||||||||||||| ||| | | |
|
|
| T |
5237359 |
ttatgaaccatccaagggaaagataaaaaagttcaagataaaaaaaaaatatattcaaaagatcatcgagcatgatggaacttgatcttttagtcttctt |
5237260 |
T |
|
| Q |
176 |
cttgacgctacaataaaatctgaaatgtttaattaata |
213 |
Q |
| |
|
||| | ||| ||||||||||| ||||||| ||||||| |
|
|
| T |
5237259 |
cttacctctaaaataaaatctgtaatgtttgattaata |
5237222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 30867253 - 30867290
Alignment:
| Q |
44 |
tctttgttattctctctaattatctatattgttaacat |
81 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
30867253 |
tctttgttattctatctaattatttatattgttaacat |
30867290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 17749844 - 17749880
Alignment:
| Q |
44 |
tctttgttattctctctaattatctatattgttaaca |
80 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
17749844 |
tctttattattctctctgattatctatattgttaaca |
17749880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5806 times since January 2019
Visitors: 4859