View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_high_48 (Length: 262)
Name: NF0733_high_48
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 100 - 233
Target Start/End: Original strand, 38290801 - 38290935
Alignment:
| Q |
100 |
aaaagaaagtggatttattgcaatataaaatcatgttaatcaatcgttt-actctaaaccatagttatcactcgaaccaatcaaaatgaagataaaaaag |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38290801 |
aaaagaaagtggatttattgcaatataaaatcatgttaatcaatcgttttattctaaaccatagttatcactcgaaccaatcaaaatgaagataaaaaag |
38290900 |
T |
|
| Q |
199 |
ggaaaataatatttagacatctaaatccaatctat |
233 |
Q |
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| T |
38290901 |
ggaaaataatatttagacatctaaatccattctat |
38290935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 38290701 - 38290777
Alignment:
| Q |
1 |
agatgctctatgcggaagttttattttaaaaatatgttcttagagctcaagatttttctttagaaacttattcatga |
77 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38290701 |
agatgctctatgcggatgttttattttaaaaatatgttcttagagctcaagatttttctttagaaacttattcatga |
38290777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 38298278 - 38298202
Alignment:
| Q |
2 |
gatgctctatgcggaagtttt-attttaaaaatatgttcttagagctcaagatttttctttagaaacttattcatga |
77 |
Q |
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||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
38298278 |
gatgctctatgcggaagtttttattttaaataattgttcttagagctcaagttttttctttcaaaacttattcatga |
38298202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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