View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_high_50 (Length: 254)
Name: NF0733_high_50
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 52239052 - 52239260
Alignment:
| Q |
16 |
cacatattcttacgtattgtaatgttgacaacagtgagcgtatatttccttcctttcctttagaccattgttgtatcttcttgtcaatgacctatatcgt |
115 |
Q |
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| T |
52239052 |
cacatattcttacgtattgtaatgttgacaacagtgagcgtatatttccttcctttcctttagaccattgttgtatcttcttgtcaatgacctatatcgt |
52239151 |
T |
|
| Q |
116 |
gtacagaaatatatgctcaatatcgttattcttctacaagttgataaaaatgaaacatgtgtaggtaagttgcaaattacttggagttcttgaatttctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52239152 |
gtacagaaatatatgctcaatatcgttattcttctacaagttgataaaaatgaaacatgtgtaggtaagttgcaaattacttggagttcttgaatttctt |
52239251 |
T |
|
| Q |
216 |
ggttctgtg |
224 |
Q |
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||||||||| |
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| T |
52239252 |
ggttctgtg |
52239260 |
T |
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