View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_high_74 (Length: 203)
Name: NF0733_high_74
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_74 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 39080758 - 39080950
Alignment:
| Q |
1 |
tgtattaggttcctaataagctctaaatatatattatatccttgtatatagttgtatcactgatcatcatcaattttaatataatttttcttgagttcta |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39080758 |
tgtattatgttcctaataagctctaaatatatattatatccttgtatatagttgtatcactgatcattatcaattttaatataatttttcttgagttcta |
39080857 |
T |
|
| Q |
101 |
ccctcaattctcaatctctttaaatgatttcatcccatttcacatctctttgattcctacctcaactgcttttacttacatttgttcaataga |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39080858 |
ccctcaattctcaatctctttaaatgatttcatcccatttcacatctctttgattcctacctcaactgcttttacttacatttgttcagtaga |
39080950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 39090169 - 39090313
Alignment:
| Q |
47 |
tatagttgtatcactgatcatcatcaattttaatataatttttcttgagttctaccctcaattctcaatctctttaaatgatttcatcccatttcacatc |
146 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||||| || |
|
|
| T |
39090169 |
tatagttgtatcact--tcatcatcaatttcaatatactttttcttgagttccaccctcaactctcaatctctttaaatgatttcctaccatttcacctc |
39090266 |
T |
|
| Q |
147 |
tctttgattcctacctcaactgcttttacttacatttgttcaataga |
193 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39090267 |
tctttgatttctacctcaactgcttctacttacatttgttcaataga |
39090313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3603 times since January 2019
Visitors: 4816