View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_high_9 (Length: 564)
Name: NF0733_high_9
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 9 - 535
Target Start/End: Original strand, 4876703 - 4877229
Alignment:
| Q |
9 |
agcagagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876703 |
agcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
4876802 |
T |
|
| Q |
109 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876803 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
4876902 |
T |
|
| Q |
209 |
ctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactctatgacttgggaatacaacagct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4876903 |
ctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactctatgacttgggaatacaacagct |
4877002 |
T |
|
| Q |
309 |
ggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaacaaagcatattcaagtgaagtaccat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4877003 |
ggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaacaaagcatattcaagtgaagtaccat |
4877102 |
T |
|
| Q |
409 |
gccatacgcgaggctgttaaaaatcaagagatcaaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagcta |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4877103 |
gccatacgcgaggctgttaaaaatcaagagatcaagcttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagcta |
4877202 |
T |
|
| Q |
509 |
agtttgaaaagtttcgagaattgcttg |
535 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4877203 |
agtttgaaaagtttcgagaattgcttg |
4877229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 9 - 535
Target Start/End: Original strand, 30189320 - 30189846
Alignment:
| Q |
9 |
agcagagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30189320 |
agcaaagagggtacttagatatgttaagggtactaataaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
30189419 |
T |
|
| Q |
109 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30189420 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatagaactcgaggaaacaagaaattgtag |
30189519 |
T |
|
| Q |
209 |
ctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactctatgacttgggaatacaacagct |
308 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
30189520 |
ctcaatctacggctgaagcagagtatgtagctgcagctgcagcagcaaatcaagctatttggttgaggaaaatagtctatgatttggggatacaacagct |
30189619 |
T |
|
| Q |
309 |
ggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaacaaagcatattcaagtgaagtaccat |
408 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
30189620 |
ggaagcaactgtggtttactgtgatagtaaatcagcaattgttattgctgaaaatccagttcaacatggaaaaaccaagcatattcaagtgaagttccat |
30189719 |
T |
|
| Q |
409 |
gccatacgcgaggctgttaaaaatcaagagatcaaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagcta |
508 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30189720 |
gccatacgcgaggctgtcaaaaatcaagagatcaagcttattcactgttgttccgactctcaagtttctgatatattgactaaatctcttccaagagcta |
30189819 |
T |
|
| Q |
509 |
agtttgaaaagtttcgagaattgcttg |
535 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30189820 |
agtttgaaaagtttcgagaattgcttg |
30189846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 9 - 535
Target Start/End: Original strand, 3062060 - 3062586
Alignment:
| Q |
9 |
agcagagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062060 |
agcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
3062159 |
T |
|
| Q |
109 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062160 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
3062259 |
T |
|
| Q |
209 |
ctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactctatgacttgggaatacaacagct |
308 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3062260 |
ctcaatccacggctgaagcaaagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactctatgacttgggcatacaacagct |
3062359 |
T |
|
| Q |
309 |
ggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaacaaagcatattcaagtgaagtaccat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062360 |
ggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaacaaagcatattcaagtgaagtaccat |
3062459 |
T |
|
| Q |
409 |
gccatacgcgaggctgttaaaaatcaagagatcaaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagcta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3062460 |
gccatacgcgaggctgttaaaaatcaagagatcaaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagcta |
3062559 |
T |
|
| Q |
509 |
agtttgaaaagtttcgagaattgcttg |
535 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
3062560 |
agtttgaaaagtttcgagaattgcttg |
3062586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 9 - 535
Target Start/End: Complemental strand, 26083637 - 26083111
Alignment:
| Q |
9 |
agcagagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083637 |
agcaaagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
26083538 |
T |
|
| Q |
109 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083537 |
tgggctggaaatatacatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
26083438 |
T |
|
| Q |
209 |
ctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactctatgacttgggaatacaacagct |
308 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26083437 |
ctcaatccacggctgaagtagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactctatgacttgggaatacaatagct |
26083338 |
T |
|
| Q |
309 |
ggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaacaaagcatattcaagtgaagtaccat |
408 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26083337 |
ggaagcaactgtgctttatggtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaaccaagcatattcaagtgaagtaccat |
26083238 |
T |
|
| Q |
409 |
gccatacgcgaggctgttaaaaatcaagagatcaaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagcta |
508 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26083237 |
gccatacgtgaggctgttaaaaatcaagagatcaagcttattcatcgttgttccgactctcaagtttctgatatattgactaaatctcttccaagagcta |
26083138 |
T |
|
| Q |
509 |
agtttgaaaagtttcgagaattgcttg |
535 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
26083137 |
agtttgaaaagtttcgagaattgcttg |
26083111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 9 - 535
Target Start/End: Complemental strand, 17440140 - 17439614
Alignment:
| Q |
9 |
agcagagagggtacttagatatgttaagggtactactcaattcggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440140 |
agcaaagagggtacttagatatgttaagggtactactcaatttggaatatggtacaagccaagtgaaaatgaaagtttgttaggctatgttgatagtgat |
17440041 |
T |
|
| Q |
109 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17440040 |
tgggctggaaatatagatgacatgaagagtactacaggctatgctttttctttaggctctggcatgttctcatggaactcgaggaaacaagaaattgtag |
17439941 |
T |
|
| Q |
209 |
ctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactctatgacttgggaatacaacagct |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17439940 |
ctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaaaatactcgatgacttgggaatacaacagct |
17439841 |
T |
|
| Q |
309 |
ggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaacaaagcatattcaagtgaagtaccat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17439840 |
ggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaatccagttcaacatggaaaaacaaagcatattcaagtgaagtaccat |
17439741 |
T |
|
| Q |
409 |
gccatacgcgaggctgttaaaaatcaagagatcaaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagcta |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17439740 |
gccatacgcgaggctgttaaaaatcaagagatcaaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagagcta |
17439641 |
T |
|
| Q |
509 |
agtttgaaaagtttcgagaattgcttg |
535 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17439640 |
agtttgaaaagtttcgagaattgcttg |
17439614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 264 - 392
Target Start/End: Complemental strand, 13015492 - 13015364
Alignment:
| Q |
264 |
tatttggttgaggaaaatactctatgacttgggaatacaacagctggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaat |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13015492 |
tatttggttgaggaaaatactctatgacttgggaatacaacagctggaagcaactgtgctttattgtgatagtaaatcagcaattgctattgctgaaaat |
13015393 |
T |
|
| Q |
364 |
ccagttcaacatggaaaaacaaagcatat |
392 |
Q |
| |
|
||| |||||||||||||||| |||||||| |
|
|
| T |
13015392 |
ccaattcaacatggaaaaaccaagcatat |
13015364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 406 - 513
Target Start/End: Complemental strand, 28013939 - 28013832
Alignment:
| Q |
406 |
catgccatacgcgaggctgttaaaaatcaagagatcaaacttattcattgttgttctgactctcaagtttctgatatattgactaaatctcttccaagag |
505 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28013939 |
catgccatacgtgagactgtcaaaaatcaagagatcaagcttattcattgttgctcaaactctcaagtttctgatatattgactaaatctcttccaagag |
28013840 |
T |
|
| Q |
506 |
ctaagttt |
513 |
Q |
| |
|
|||||||| |
|
|
| T |
28013839 |
ctaagttt |
28013832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 35942681 - 35942767
Alignment:
| Q |
192 |
gaaacaagaaattgtagctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaa |
278 |
Q |
| |
|
||||||||| |||||||||| || || || ||||| |||| |||||| ||| | ||||||| ||| |||||||||||||||||||| |
|
|
| T |
35942681 |
gaaacaagaggttgtagctcagtcaacagcagaagctgagtttgtagctgcaacagcagcagtaaatcaagctatttggttgaggaa |
35942767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 20330762 - 20330676
Alignment:
| Q |
192 |
gaaacaagaaattgtagctcaatccacggctgaagcagagtatgtagccgcagctgcagcagcaaaccaagctatttggttgaggaa |
278 |
Q |
| |
|
||||||||| |||||||||| || || || ||||| |||| |||||| ||| | ||||| | ||| |||||||||||||||||||| |
|
|
| T |
20330762 |
gaaacaagaggttgtagctcagtcaacagcagaagctgagtttgtagctgcaacagcagctgtaaatcaagctatttggttgaggaa |
20330676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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