View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_109 (Length: 252)
Name: NF0733_low_109
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_109 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 38290321 - 38290562
Alignment:
| Q |
11 |
cataggtaacaaacacatagatatccaacaaaaaggctcccttaacaataggaaaagagtttgtctaccaattctataaataccactcacccaagtagtg |
110 |
Q |
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| T |
38290321 |
cataggtaacaaacacatagatatccaacaaaaaggctaccttaacaataggaaaagagtttgtctaccaattctatgaataccactcacccaagtagtg |
38290420 |
T |
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| Q |
111 |
aaaactaagacccaaaccgttaaactagaactatgtagctatgattccttaagacccaaaatgtatggccacgaaaaccttttcgagctcacatccaatc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
38290421 |
aaaactaagacccaaaccgttaaactagaactatgtagctatgattccttaagacccaaaatgtatggccacggaaaccttttcgagctcacatctaatc |
38290520 |
T |
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| Q |
211 |
acccatctatattgaagtactttctacaagtacatttgacgc |
252 |
Q |
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| T |
38290521 |
acccatctatattgaagtactttctacaagtacatttgacgc |
38290562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 10068015 - 10067863
Alignment:
| Q |
16 |
gtaacaaacacat-agatatccaacaaaaaggctcccttaacaataggaaaagagtttgtctaccaattctataaata-ccactcacccaagtagtgaaa |
113 |
Q |
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|||||||||||| |||||||| | ||| || |||||||||||||||||||| || |||| | ||| |||||||||| || ||||| |||||||| ||| |
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| T |
10068015 |
gtaacaaacacaggagatatccgagaaatagactcccttaacaataggaaaataggttgtatgccacgtctataaataccccctcactcaagtagtaaaa |
10067916 |
T |
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| Q |
114 |
actaagacccaaaccgttaaactagaactatgtagctatgattccttaagacc |
166 |
Q |
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| T |
10067915 |
gcttggtcccaaactgctaaactagaactacgttgctctgatcctttaagacc |
10067863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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