View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_11 (Length: 576)
Name: NF0733_low_11
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Original strand, 21180626 - 21181092
Alignment:
| Q |
9 |
gagatgaaccggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180626 |
gagatgaaccggtgaagatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgct |
21180725 |
T |
|
| Q |
109 |
caacagttgcccattgcttgaaaaactcacattggacataagttcacagcttatatttgaggtcagtcaaatacttttacatttttctctctcaatataa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
21180726 |
caacagttgcccattgcttgaaaaactcatattggacataagtccacaacttatatttgaggtcagtcaaatacttt-acatttctctctctcaatac-- |
21180822 |
T |
|
| Q |
209 |
tttaacattgtaatcattgatatggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagacctta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21180823 |
-ttaacattgtaatcattgatatggtttgatttttaatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagacctta |
21180921 |
T |
|
| Q |
309 |
agaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21180922 |
agaaattttggcaaactcgtcgagtgtttcctgaatgcttgaaaaatagtttgaaggtggtagaagtaattggattgagagccacaaacgaagaacttat |
21181021 |
T |
|
| Q |
409 |
gacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatg |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181022 |
gacttgttgctttcttatgcaaggaaaagttttggaacagattaatattaagttgtggaatgaagatgatg |
21181092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 4e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 228 - 476
Target Start/End: Complemental strand, 40994072 - 40993824
Alignment:
| Q |
228 |
atatggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagaccttaagaaattttggcaaactcg |
327 |
Q |
| |
|
|||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||| | ||||||| || |||||||||||| || |
|
|
| T |
40994072 |
atatggtttgatttttaacacttttgaatgtttggttgtatatattacaggactatggacttccctattatagagaccttgcgagattttggcaaacgcg |
40993973 |
T |
|
| Q |
328 |
tcgagtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttatgacttgttgctttcttatg |
427 |
Q |
| |
|
||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40993972 |
tcgagtgtttcctcaatgcttgcaaaatactttgaaggtggtagaagtaattggattgagagccacaaacgaagaacttatgacttgttgctttcttatg |
40993873 |
T |
|
| Q |
428 |
caaggaaaagttttggaacagattaatattaagttgtggaatgaagatg |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40993872 |
caaggaaaagttttggaacagattaatattaagttgtggaatgaagatg |
40993824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 231 - 476
Target Start/End: Complemental strand, 40986309 - 40986064
Alignment:
| Q |
231 |
tggtttgattttttatacttttgaatgattggttgtatatattacaggactatacacttccctatcaagtagaccttaagaaattttggcaaactcgtcg |
330 |
Q |
| |
|
||||||||||||| | ||||||||||| || | ||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||| |
|
|
| T |
40986309 |
tggtttgatttttaacacttttgaatgttttctcgtatacattacaggactatagacttccctatcttacagaccttgagaaattttggcaaacgcgtcg |
40986210 |
T |
|
| Q |
331 |
agtgtttcctgaatgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttatgacttgttgctttcttatgcaa |
430 |
Q |
| |
|
||||||| || |||||||| || ||| ||||||| || ||||| || |||||| ||||| ||||||| ||||||||| ||||||||||||||| ||| || |
|
|
| T |
40986209 |
agtgtttgctcaatgcttgcaaaatactttgaagatgatagaaatatttggatcgagagccacaaaccaagaacttaggacttgttgctttctaatgaaa |
40986110 |
T |
|
| Q |
431 |
ggaaaagttttggaacagattaatattaagttgtggaatgaagatg |
476 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40986109 |
gggaaagctttggaacagattaatattaagttgtcgaatgaagatg |
40986064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 40994297 - 40994137
Alignment:
| Q |
25 |
gatgcaaagtgctttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
40994297 |
gatgcaaagtgctttgaatgtaaaacatttgattctaaagactcaaatgcatccatatgagctttgtggaattgaattcttgctcaacagttgcccattg |
40994198 |
T |
|
| Q |
125 |
cttgaaaaactcacattggacataagttcacagcttatatttgaggtcagtcaaatacttt |
185 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||||||||||||| ||| ||||||||| |
|
|
| T |
40994197 |
cttgaaaaacttacattggacataagtccacaagttatatttgaggtgagtaaaatacttt |
40994137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 247 - 473
Target Start/End: Complemental strand, 40989669 - 40989433
Alignment:
| Q |
247 |
acttttgaatgattggttgtatatattacaggac----tatacacttccctatcaagtagaccttaagaaattttggcaaactcgtcgagtgtttcctga |
342 |
Q |
| |
|
||||||||||| ||| | |||||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
40989669 |
acttttgaatgtttgctcgtatatattagaggaccatatatacacttccatatcatgttgaccttaagaaattttggcaaactcgtcgagtgttttctca |
40989570 |
T |
|
| Q |
343 |
atgcttgaaatatagtttgaaggtggtagaagtaattggattgagaggcacaaacgaagaacttatgacttgttgctttcttatgcaaggaaaagttttg |
442 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||| |||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
40989569 |
atgcttgcaaaatactttgaaggtggtagaagtaataggattgagagccacagacgaataacttataacttgttgctttcttatgcaaggaatttttttg |
40989470 |
T |
|
| Q |
443 |
gaacagatta------atattaagttgtggaatgaag |
473 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |
|
|
| T |
40989469 |
gaacatattattaattatattaagttgtggaatgaag |
40989433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 40986521 - 40986366
Alignment:
| Q |
37 |
tttgaatgtaaaacatttgactctaaagactaaaatgcattcatatgagctttgtggatttgaattcatgctcaacagttgcccattgcttgaaaaactc |
136 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||||| ||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||| |
|
|
| T |
40986521 |
tttgaatgtaagacatttgattctaaaaacacaaatgcataaatatgagctttgtggatttgaattcttgcttaacagttgcccgttgctagaaaaactc |
40986422 |
T |
|
| Q |
137 |
acattggacataagttcacagcttatatttgaggtcagtcaaatacttttacattt |
192 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||| |||||||||| |||||||| |
|
|
| T |
40986421 |
acattggacataagtcaacaagttatatttaaggtgagtcaaataccgttacattt |
40986366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4189 times since January 2019
Visitors: 4829