View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_110 (Length: 251)

Name: NF0733_low_110
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_110
NF0733_low_110
[»] chr1 (3 HSPs)
chr1 (1-223)||(3242039-3242261)
chr1 (1-121)||(14303895-14304015)
chr1 (89-171)||(16979581-16979663)
[»] chr7 (3 HSPs)
chr7 (51-172)||(36853048-36853168)
chr7 (62-171)||(24547668-24547777)
chr7 (66-129)||(46766088-46766151)
[»] chr5 (2 HSPs)
chr5 (53-172)||(35035571-35035690)
chr5 (63-123)||(16230759-16230819)
[»] chr3 (3 HSPs)
chr3 (110-172)||(3448524-3448586)
chr3 (109-171)||(17069482-17069544)
chr3 (1-45)||(47702687-47702731)
[»] chr2 (3 HSPs)
chr2 (13-122)||(29427781-29427890)
chr2 (61-123)||(26804050-26804112)
chr2 (14-171)||(10231799-10231956)
[»] chr8 (1 HSPs)
chr8 (13-138)||(26819244-26819367)
[»] chr4 (2 HSPs)
chr4 (89-171)||(49132505-49132587)
chr4 (91-171)||(45387238-45387318)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3242261 - 3242039
Alignment:
Q  1 atatacatagttagtgtaaagattttttaaactgttaatcaatcagaactgtcagatcaataaaaatgttcgactttaattatcactccttctaaagtca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  3242261 atatacatagttagtgtaaagattttttaaactgttaatcaatcagaactgtcagatcaataaaaacgttagactttaattatcactccttctaaagtca 3242162  T
Q  101 gacataagattggttgtgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactcagaatatttaaaagaaaaacataaatgac 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3242161 gacataagattggttatgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactcagaatatttaaaagaaaaacataaatgac 3242062  T
Q  201 ttacctcttcagatgcagaattt 223  Q
    |||||||||||||||||||||||    
T  3242061 ttacctcttcagatgcagaattt 3242039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 14303895 - 14304015
Alignment:
Q  1 atatacatagttagtgtaaagattttttaaactgttaatcaatcagaactgtcagatcaataaaaatgttcgactttaattatcactccttctaaagtca 100  Q
    |||||||| || | ||||||||||||||| ||||| |||||||||| |  ||||||||  || ||| ||| ||||||||| || ||| ||| ||||||||    
T  14303895 atatacattgtcaatgtaaagattttttacactgtcaatcaatcagcatcgtcagatcgttataaaagtttgactttaatcataactacttttaaagtca 14303994  T
Q  101 gacataagattggttgtgatt 121  Q
      |||| ||||||||||||||    
T  14303995 ctcatatgattggttgtgatt 14304015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 16979663 - 16979581
Alignment:
Q  89 cttctaaagtcagacataagattggttgtgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactc 171  Q
    |||||||||||| | |||   |||||||||||||| | ||||||| || | |||||||||||  |||||||||||||||||||    
T  16979663 cttctaaagtcacatatattgttggttgtgatttgttgacagtgtaaatctttttacactgacagtgtatcaaaattaaactc 16979581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 36853168 - 36853048
Alignment:
Q  51 gtcagatcaataaaaatgttcgactttaattatcactccttctaaagtcagacataagattggttgtgatttgctaacagtgttaaacattttacactga 150  Q
    ||||||||||||||||| || || | |||| || ||| |||||||||||| ||||| ||||||||||||||| || ||| || ||||| ||||| || ||    
T  36853168 gtcagatcaataaaaatatttgattataatcataactacttctaaagtcacacatatgattggttgtgatttactgacaatg-taaactttttataccga 36853070  T
Q  151 gtgtgtatcaaaattaaactca 172  Q
      ||||||||||||||||||||    
T  36853069 cagtgtatcaaaattaaactca 36853048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 24547777 - 24547668
Alignment:
Q  62 aaaaatgttcgactttaattatcactccttctaaagtcagacataagattggttgtgatttgctaacagtgttaaacattttacactgagtgtgtatcaa 161  Q
    ||||||||| ||||| ||| || ||| |||||||| ||| | ||| |||||||||||||||  | ||||||| |||| |||||||||||  |||||||||    
T  24547777 aaaaatgtttgacttcaatcataactacttctaaaatcacagatatgattggttgtgatttattgacagtgtaaaactttttacactgacggtgtatcaa 24547678  T
Q  162 aattaaactc 171  Q
    | | ||||||    
T  24547677 attcaaactc 24547668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 46766088 - 46766151
Alignment:
Q  66 atgttcgactttaattatcactccttctaaagtcagacataagattggttgtgatttgctaaca 129  Q
    ||||| ||||||||| ||  || |||||||||||| ||||| |||||||| |||||||||||||    
T  46766088 atgtttgactttaatcatacctgcttctaaagtcacacatatgattggttatgatttgctaaca 46766151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 35035571 - 35035690
Alignment:
Q  53 cagatcaataaaaatgttcgactttaattatcactccttctaaagtcagacataagattggttgtgatttgctaacagtgttaaacattttacactgagt 152  Q
    ||||||||||||||| || || |||||| || ||| |||||||| ||| ||||| ||||||||||||||| || ||| ||| |||  ||||| || ||      
T  35035571 cagatcaataaaaatatttgattttaatcataactacttctaaaatcacacatatgattggttgtgatttactgacaatgtaaaattttttataccgaca 35035670  T
Q  153 gtgtatcaaaattaaactca 172  Q
    ||||||||||||||||||||    
T  35035671 gtgtatcaaaattaaactca 35035690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 16230819 - 16230759
Alignment:
Q  63 aaaatgttcgactttaattatcactccttctaaagtcagacataagattggttgtgatttg 123  Q
    |||||||| ||||||||| || ||| |||||||| ||| ||||| ||||||||||||||||    
T  16230819 aaaatgtttgactttaatcataactacttctaaaatcaaacatatgattggttgtgatttg 16230759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 3448586 - 3448524
Alignment:
Q  110 ttggttgtgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactca 172  Q
    |||||||||||||| | ||||||| |||| |||||||||||  |||||||||| |||||||||    
T  3448586 ttggttgtgatttggttacagtgtaaaactttttacactgacagtgtatcaaagttaaactca 3448524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 17069544 - 17069482
Alignment:
Q  109 attggttgtgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactc 171  Q
    ||||||||||||||  | ||||||| |||| ||||||||||   |||||||||||||||||||    
T  17069544 attggttgtgatttattgacagtgtcaaacgttttacactggcagtgtatcaaaattaaactc 17069482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 47702687 - 47702731
Alignment:
Q  1 atatacatagttagtgtaaagattttttaaactgttaatcaatca 45  Q
    ||||| || |||||||||||||||||||| ||||| |||||||||    
T  47702687 atatatattgttagtgtaaagattttttacactgtcaatcaatca 47702731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 29427890 - 29427781
Alignment:
Q  13 agtgtaaagattttttaaactgttaatcaatcagaactgtcagatcaataaaaatgttcgactttaattatcactccttctaaagtcagacataagattg 112  Q
    ||||||||||||||||||||||| | ||||||| || ||||| |||| ||| || |||   |||||||| | | | ||| |||||||| ||||| | |||    
T  29427890 agtgtaaagattttttaaactgtcattcaatcataattgtcaaatcattaagaacgtttccctttaattgtaattacttttaaagtcacacatatggttg 29427791  T
Q  113 gttgtgattt 122  Q
    ||||||||||    
T  29427790 gttgtgattt 29427781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 26804112 - 26804050
Alignment:
Q  61 taaaaatgttcgactttaattatcactccttctaaagtcagacataagattggttgtgatttg 123  Q
    |||||||||  |||| ||||||| | | |||||||||||||| ||||||||| ||||||||||    
T  26804112 taaaaatgtatgactctaattataattacttctaaagtcagagataagattgattgtgatttg 26804050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 10231956 - 10231799
Alignment:
Q  14 gtgtaaagattttttaaactgttaatcaatcagaactgtcagatcaataaaaatgttcgactttaattatcactccttctaaagtcagacataagattgg 113  Q
    |||||||||| ||||| ||||| ||||||||| ||   |||||||| |||||   || |||||| || || |||  ||||||| ||| ||||| |||||     
T  10231956 gtgtaaagatattttatactgtcaatcaatcacaatcatcagatcattaaaatcatttgacttttatcataactatttctaaaatcacacatatgattga 10231857  T
Q  114 ttgtgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactc 171  Q
    |||| || ||   ||||||| |||| |||||||||||   | ||||||||||||||||    
T  10231856 ttgtaatatgtggacagtgtaaaactttttacactgacaatatatcaaaattaaactc 10231799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 26819244 - 26819367
Alignment:
Q  13 agtgtaaagattttttaaactgttaatcaatcagaactgtcagatcaataaaaatgttcgactttaattatcactccttctaaagtcagacataagattg 112  Q
    |||||||||||| |||| ||  | ||||||| | ||  || |||||| |||||||||| |||||| ||    ||| |||||||||||| ||||  |||||    
T  26819244 agtgtaaagattatttacacattcaatcaattacaatcgttagatcattaaaaatgtttgacttttatcgcaactacttctaaagtcacacat--gattg 26819341  T
Q  113 gttgtgatttgctaacagtgttaaac 138  Q
    ||||||||||||||| ||||| ||||    
T  26819342 gttgtgatttgctaatagtgtaaaac 26819367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 49132587 - 49132505
Alignment:
Q  89 cttctaaagtcagacataagattggttgtgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactc 171  Q
    |||||||||||| || |  ||||| |||||||||||||||| ||| |||| |||| ||| ||  |||||||||| ||||||||    
T  49132587 cttctaaagtcatacgtttgattgattgtgatttgctaacaatgtaaaaccttttgcacagatggtgtatcaaacttaaactc 49132505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 45387238 - 45387318
Alignment:
Q  91 tctaaagtcagacataagattggttgtgatttgctaacagtgttaaacattttacactgagtgtgtatcaaaattaaactc 171  Q
    |||||||||| | ||| |||||||||||||||| |   ||||| |||||||||||| |||   |||||||||||| |||||    
T  45387238 tctaaagtcataaatatgattggttgtgatttgttggtagtgtaaaacattttacattgatgatgtatcaaaattgaactc 45387318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4791 times since January 2019
Visitors: 4839