View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_111 (Length: 251)

Name: NF0733_low_111
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_111
NF0733_low_111
[»] chr6 (13 HSPs)
chr6 (41-234)||(3003530-3003723)
chr6 (27-226)||(2952080-2952279)
chr6 (41-226)||(2927307-2927492)
chr6 (41-224)||(2937609-2937792)
chr6 (41-224)||(2974156-2974339)
chr6 (41-224)||(2964658-2964841)
chr6 (41-215)||(2929467-2929641)
chr6 (41-213)||(2934759-2934931)
chr6 (44-224)||(2997122-2997302)
chr6 (41-224)||(2658731-2658920)
chr6 (41-212)||(2983024-2983198)
chr6 (69-212)||(2978408-2978550)
chr6 (81-157)||(2954557-2954633)
[»] chr7 (1 HSPs)
chr7 (41-222)||(3339176-3339357)
[»] scaffold0024 (3 HSPs)
scaffold0024 (41-224)||(34988-35171)
scaffold0024 (40-157)||(44676-44793)
scaffold0024 (167-212)||(45123-45168)
[»] chr3 (2 HSPs)
chr3 (40-228)||(49613581-49613769)
chr3 (61-208)||(49618589-49618735)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 41 - 234
Target Start/End: Original strand, 3003530 - 3003723
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||| ||||  ||||||||||||||||||||||||||||||||||    
T  3003530 agggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctcccgaaaac 3003629  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgtttcacccatt 234  Q
    || |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3003630 ctcaagtcaagtaaacacttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactcggtggatgtttcatccatt 3003723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 2952279 - 2952080
Alignment:
Q  27 atatatgtctccatagggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaa 126  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||  ||||||||||||||||||||||||||    
T  2952279 atatatgactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaa 2952180  T
Q  127 ctcctcccgaaaaccttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgttt 226  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  2952179 ctccttccgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttt 2952080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 41 - 226
Target Start/End: Complemental strand, 2927492 - 2927307
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| |||  ||||  ||||||||||||||||||||||||||||||||||||||||    
T  2927492 agggtaatgacactgctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctcccgaaaac 2927393  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgttt 226  Q
    || |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  2927392 ctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttt 2927307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 2937792 - 2937609
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||  ||||  |||| |||||||||||||||||||||||||||| |||||     
T  2937792 agggtaatgacactgctccaaagcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctgaaaat 2937693  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgt 224  Q
    || |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  2937692 ctcaagtcaagtaaacaattactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgt 2937609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 2974339 - 2974156
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||   |||| |||||||||||||||||||||||||||||||||||    
T  2974339 agggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaaaac 2974240  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgt 224  Q
    || |||||| ||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  2974239 ctcaagtcatgtaaacattcacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgt 2974156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 2964841 - 2964658
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||||||||||  |||   | || |||||||||||||||||||||||||||||||||||    
T  2964841 agggtaacgacactgctccaaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccgaaaac 2964742  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgt 224  Q
    || |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  2964741 ctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgt 2964658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 41 - 215
Target Start/End: Complemental strand, 2929641 - 2929467
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    |||||||||| ||||||||||||||| |||||||| ||||||| ||||||||  ||| | |||| |||||||||||||||||||||||||||| ||||||    
T  2929641 agggtaatgaaactgctccaaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctgaaaac 2929542  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactc 215  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2929541 cttaagtcaagtaaacacttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactc 2929467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 41 - 213
Target Start/End: Complemental strand, 2934931 - 2934759
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    ||||||||||||||||||||||||||||||||| |||||  ||||||| |||  |||   |||  |||||||||||||||||||||||||||||||||||    
T  2934931 agggtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaac 2934832  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcac 213  Q
    || |||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  2934831 ctcaagtcaagtaaacacttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcac 2934759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 2997122 - 2997302
Alignment:
Q  44 gtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaacctt 143  Q
    ||||||| ||||||||||||||||||||||||||||||||  ||||||| |||||  |||  ||||   |||||||||||||||| |||||||||||||     
T  2997122 gtaatgaaactgctccaaagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccgaaaacctc 2997221  T
Q  144 aagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgt 224  Q
    |||||||||||||| || |||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||| |||||    
T  2997222 aagtcaagtaaacacttgcttttagtgttcactttaaacttaactccagcttctaacaactcagttgcacttggtagatgt 2997302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 2658731 - 2658920
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccga---- 136  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||| |||  |||   |||  |||||||||||||||||||||||||||| ||        
T  2658731 agggtaatgacattgctccaaagcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgatttt 2658830  T
Q  137 --aaaccttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgt 224  Q
      |||||| |||||||||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  2658831 gaaaacctcaagtcaagtaaacacttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgt 2658920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 2983198 - 2983024
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtct---gatccgtaacttttaattgaggaatttcaagaactcctcccgaa 137  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||||||    ||||   |||| ||||||||||||||||||||||||||||||||    
T  2983198 agggtaatgacaatgctccaaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcccgaa 2983099  T
Q  138 aaccttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgca 212  Q
    ||||| ||||||  |||||| ||||||| ||| ||||||| |||||||||||||||||||| ||||| |||||||    
T  2983098 aacctcaagtcatataaacacttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgca 2983024  T

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Target: chr6; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 2978550 - 2978408
Alignment:
Q  69 atattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaaccttaagtcaagtaaacatttactttcag 168  Q
    |||| |||||| ||||||||||||  ||||  |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||| ||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T
Q  169 tgttcacttcaaacctaactccagcttctaacaactcagttgca 212  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||    
T  2978450 tgttcactttaaacctaa-tccagcttctaacaattcagttgca 2978408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 2954633 - 2954557
Alignment:
Q  81 aaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaaccttaagtcaagtaaaca 157  Q
    ||||| |||||||||||   |||| |||||||||||||| ||||||||| |   |||||||| ||||||||||||||    
T  2954633 aaaatatcggtctgatcatcaactcttaattgaggaattccaagaactcgttgtgaaaacctcaagtcaagtaaaca 2954557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 3339357 - 3339176
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||   |||| |||||||||||||||||||||||||||||||||||    
T  3339357 agggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccgaaaac 3339258  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggat 222  Q
    || ||| |||||||||| | ||||| ||||||||||| |||||||||||| |||||||||||||||||||| || |||||||    
T  3339257 ctcaagccaagtaaacactcacttttagtgttcactttaaacctaactcctgcttctaacaactcagttgcgcttggtggat 3339176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 34988 - 35171
Alignment:
Q  41 agggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaac 140  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||  ||||| |||| ||||||||||||| |||||| ||||||||    
T  34988 agggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccgaaaac 35087  T
Q  141 cttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgt 224  Q
    |  |||||||||||||| | ||||| ||  ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  35088 cccaagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgt 35171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 44676 - 44793
Alignment:
Q  40 tagggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaa 139  Q
    ||||||||||| ||| ||||| |||||||||||| | ||| |||||||| |  |||||   | || |||||||||||||||||||||||| | | |||||    
T  44676 tagggtaatgatactactccatagcaaccatatttcaaaacaaaatttcaggttgatcatcagctcttaattgaggaatttcaagaactctttctgaaaa 44775  T
Q  140 ccttaagtcaagtaaaca 157  Q
    ||| || |||||||||||    
T  44776 cctcaaatcaagtaaaca 44793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 45123 - 45168
Alignment:
Q  167 agtgttcacttcaaacctaactccagcttctaacaactcagttgca 212  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||    
T  45123 agtggtcacttgaaacctaactccagcttctaacaactcatttgca 45168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 49613769 - 49613581
Alignment:
Q  40 tagggtaatgacactgctccaaagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaa 139  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||||| |||  ||||  |||||| |||||||||||||||||||| | ||| |||||    
T  49613769 tagggtagtgacattgctccaaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaa 49613670  T
Q  140 ccttaagtcaagtaaacatttactttcagtgttcacttcaaacctaactccagcttctaacaactcagttgcactcggtggatgtttca 228  Q
    ||| || ||||||||||| | ||||| ||||||||||| |||||| || ||||||||||||||||||||||||||| || |||||||||    
T  49613669 cctcaaatcaagtaaacactcacttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgtttca 49613581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 49618735 - 49618589
Alignment:
Q  61 aagcaaccatattccgaaataaaatttcggtctgatccgtaacttttaattgaggaatttcaagaactcctcccgaaaaccttaagtcaagtaaacattt 160  Q
    ||||||||||||||| ||||||| || ||||| | |||  |||| |||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |    
T  49618735 aagcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaacctcaagtcaagtaaacatgt 49618637  T
Q  161 actttcagtgttcacttcaaacctaactccagcttctaacaactcagt 208  Q
    | ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  49618636 agttttagtgttcactttaaacctaactccagcttctaacaactcagt 49618589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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