View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_112 (Length: 251)
Name: NF0733_low_112
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_112 |
 | |
|
| [»] scaffold0854 (1 HSPs) |
| | |
|
| [»] scaffold1344 (1 HSPs) |
| |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 27370361 - 27370579
Alignment:
| Q |
12 |
atgaagaatttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagctaatcatccagaaatgtggaattttgcgaagct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |
|
|
| T |
27370361 |
atgaagaatttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagaggagctaacaatccaaaaatgtggaattttgcgaagct |
27370460 |
T |
|
| Q |
112 |
tgtttaaatgcaccataaatttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcct |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| || | |||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27370461 |
tgtttaaatgcagcataaatttctgcaatctaaagaacgtgaccatatattcatgtcctatgctggtttctgtttttgatctgtcaacttctcgaggcct |
27370560 |
T |
|
| Q |
212 |
gctgctgttggaggaattg |
230 |
Q |
| |
|
|| |||||||||| ||||| |
|
|
| T |
27370561 |
gccgctgttggagaaattg |
27370579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 18723399 - 18723280
Alignment:
| Q |
132 |
ttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgttggaggaattga |
231 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18723399 |
ttctccaatctaaagaatgtgaccttaagatcatgttctatgttggtttctgtttttgatttgtcaacttctcgaggcctgctgctgttggaggaattga |
18723300 |
T |
|
| Q |
232 |
taatatttaattgtgagaaa |
251 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18723299 |
taatatttaattgtgagaaa |
18723280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 26117249 - 26117018
Alignment:
| Q |
20 |
tttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagctaatcatccagaaatgtggaattttgcgaagcttgtttaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||||||||||| ||||| | | | ||| || ||||| ||||||||||||| |
|
|
| T |
26117249 |
tttggaagaattatgcaatggtcccatctcctttgactcaatgaacaatttagaggagctatatgtgaacgagtgtaaaaatttgcaaagcttgtttaaa |
26117150 |
T |
|
| Q |
120 |
tgcaccataaatttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgt |
219 |
Q |
| |
|
|||| | ||||| || |||||||||||| |||||| ||| |||||| || | |||||||||||||| || ||||| ||||||| | || ||| ||||| |
|
|
| T |
26117149 |
tgcagcctaaatctcagcaatctaaagaccgtgacactaatatcatgctcaagattggtttctgtttttgaactgtccacttctcaaagcttgccgctgt |
26117050 |
T |
|
| Q |
220 |
tggaggaattgataatatttaattgtgagaaa |
251 |
Q |
| |
|
||||||||||| |||| || ||||||||||| |
|
|
| T |
26117049 |
tggaggaattggaaataattgattgtgagaaa |
26117018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 27344030 - 27344149
Alignment:
| Q |
132 |
ttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgttggaggaattga |
231 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
27344030 |
ttctccaatcttaagaacgtgaccttaagatcatgttctatgttggtttctgtttttgatctgtcaacttctagaggcctgctgctattggagaaattgg |
27344129 |
T |
|
| Q |
232 |
taatatttaattgtgagaaa |
251 |
Q |
| |
|
|||| || |||| |||||| |
|
|
| T |
27344130 |
aaataattgattgcgagaaa |
27344149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 26239513 - 26239282
Alignment:
| Q |
20 |
tttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagctaatcatccagaaatgtggaattttgcgaagcttgtttaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| | ||||||||||||| ||||| ||| || | |||| || ||||||||||||||||||| |
|
|
| T |
26239513 |
tttggaagaattatgcaatggtcccatcgcctttgactcaacgaacaatttagagaagctatctatcaaggagtgtgaaaatttgcgaagcttgtttaaa |
26239414 |
T |
|
| Q |
120 |
tgcaccataaatttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgt |
219 |
Q |
| |
|
|||| | ||||| || ||| |||||||| ||| ||| || ||| || | |||||||||||||| || || |||||||||| | || ||| ||||| |
|
|
| T |
26239413 |
tgcagcctaaatctcagcagtctaaagactgtggaattagaacaatgctcaaaattggtttctgtttttgaactatcaacttctcaaagcttgccgctgt |
26239314 |
T |
|
| Q |
220 |
tggaggaattgataatatttaattgtgagaaa |
251 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||| |
|
|
| T |
26239313 |
tggaggaattgaaaatagttaattgtaagaaa |
26239282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 18081240 - 18081034
Alignment:
| Q |
18 |
aatttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagctaatcatccagaaatgtggaattttgcgaagcttgttta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||||| ||| || ||| | |||||| || |||| || |
|
|
| T |
18081240 |
aatttggaagaattatgcaatggtcccatctcaattgattcaatgaacaatttagaggagctaaccatggagtgctgtcaacttttgcaaacattgtcta |
18081141 |
T |
|
| Q |
118 |
aatgcaccataaatttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgct |
217 |
Q |
| |
|
|||||| | ||||| | ||||||| |||||| ||||| ||||||||||| | | ||||||||||||||| || |||||||| |||||| |||||||||| |
|
|
| T |
18081140 |
aatgcagcctaaatcttcgcaatctgaagaacatgaccctaaaatcatgtccaacgttggtttctgtttttgacctgtcaacatctcgaagcctgctgct |
18081041 |
T |
|
| Q |
218 |
gttggag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
18081040 |
gttggag |
18081034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 26145253 - 26145022
Alignment:
| Q |
20 |
tttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagctaatcatccagaaatgtggaattttgcgaagcttgtttaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||||| ||||||| |||| || || | |||| || ||||| ||||||||||||| |
|
|
| T |
26145253 |
tttggaagaattatgcaatggtcccatctcctttgactcaatgaacactttagaggagctgtatattaaggagtgtgaaaatttgcaaagcttgtttaaa |
26145154 |
T |
|
| Q |
120 |
tgcaccataaatttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgt |
219 |
Q |
| |
|
|||| | ||||| || |||||||||||| |||| ||||||||||| || | |||||||||||||| || |||| ||||||| | || | | |||| |
|
|
| T |
26145153 |
tgcagcctaaatctcagcaatctaaagactgtgaaattaaaatcatgctcaagattggtttctgtttttgaaatgtccacttctcaaagctttccactgt |
26145054 |
T |
|
| Q |
220 |
tggaggaattgataatatttaattgtgagaaa |
251 |
Q |
| |
|
||||| |||||| |||| || ||||||||||| |
|
|
| T |
26145053 |
tggagaaattgaaaataattgattgtgagaaa |
26145022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 26183699 - 26183468
Alignment:
| Q |
20 |
tttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagctaatcatccagaaatgtggaattttgcgaagcttgtttaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||| |||| | |||| ||| | | ||| || ||||||||||||||||||| |
|
|
| T |
26183699 |
tttggaagaattatgcaatggtcccatctcctctgactcaatgaattttttaaaaaagctgtatatcaacgagtgtaaaaatttgcgaagcttgtttaaa |
26183600 |
T |
|
| Q |
120 |
tgcaccataaatttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgt |
219 |
Q |
| |
|
|||| | ||||| || |||| ||||||| |||| ||| |||||| || | |||||||||||||| | ||||||||||||| | || ||| |||| |
|
|
| T |
26183599 |
tgcagcctaaatctcagcaaactaaagacggtgaaactaatatcatgctcaagattggtttctgtttttaaactgtcaacttctcaaagcttgccactgt |
26183500 |
T |
|
| Q |
220 |
tggaggaattgataatatttaattgtgagaaa |
251 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| |
|
|
| T |
26183499 |
tggaggaattgaatatagttgattgtgagaaa |
26183468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 26212306 - 26212075
Alignment:
| Q |
20 |
tttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagctaatcatccagaaatgtggaattttgcgaagcttgtttaaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| ||||| ||| | |||| ||| || | |||| || ||||||||||||||||||| |
|
|
| T |
26212306 |
tttggaagaattatgcaatggtcccatctcctatgactcaatgaaattttttaaaaagctgtatatcaaggagtgtgaaaatttgcgaagcttgtttaaa |
26212207 |
T |
|
| Q |
120 |
tgcaccataaatttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgt |
219 |
Q |
| |
|
|||| | ||||| || ||| |||||||| ||| |||||| ||| || | |||||||||||||| || || |||||||||| | || ||| ||||| |
|
|
| T |
26212206 |
tgcagcctaaatctcagcagtctaaagattgtggaattaaaacaatgctcaaaattggtttctgtttttgaactatcaacttctcaaagcttgccgctgt |
26212107 |
T |
|
| Q |
220 |
tggaggaattgataatatttaattgtgagaaa |
251 |
Q |
| |
|
||||| |||||| |||| |||||||| ||||| |
|
|
| T |
26212106 |
tggagaaattgaaaatagttaattgtaagaaa |
26212075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 18031426 - 18031364
Alignment:
| Q |
12 |
atgaagaatttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagag |
74 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||| | ||||||| |||||| |||||||||||||| |
|
|
| T |
18031426 |
atgaagaaattggaagaattgtgcaacggttcaatcttcttggactctctgaacaatttagag |
18031364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 27998670 - 27998731
Alignment:
| Q |
18 |
aatttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagct |
79 |
Q |
| |
|
|||||||||||||||||||||||||| | | || ||||||| |||||| ||||||| |||| |
|
|
| T |
27998670 |
aatttggaagaattatgcaatggtcctctttcctttgactctctgaacagtttagagaagct |
27998731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 4418 - 4200
Alignment:
| Q |
12 |
atgaagaatttggaagaattatgcaatggtcccatcttctctgactctatgaacaatttagagcagctaatcatccagaaatgtggaattttgcgaagct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
4418 |
atgaagaatttggaagaattatgcaatggtcccatcttctttgactctatgaacaatttagaggagctaactatcttgaaatgtggaattttgcgaagct |
4319 |
T |
|
| Q |
112 |
tgtttaaatgcaccataaatttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcct |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||| ||| ||||||||||||||||| | |
|
|
| T |
4318 |
tgtttaaatgcagcataaatttctgcaatctaaagaacgtgaccttatattcatgttgtatgttggtttctgtttttgatatgtcaacttctcgaggctt |
4219 |
T |
|
| Q |
212 |
gctgctgttggaggaattg |
230 |
Q |
| |
|
|| |||||||||| ||||| |
|
|
| T |
4218 |
gccgctgttggagaaattg |
4200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 717 - 836
Alignment:
| Q |
132 |
ttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgttggaggaattga |
231 |
Q |
| |
|
|||| |||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||||| || |||| |||||||| |||||| |||||| |
|
|
| T |
717 |
ttctccaatctaaagaaggtgactttaatttcatgttctatgttggtttctgtttttgatctgtcaactgctagaggactgctgctattggagaaattga |
816 |
T |
|
| Q |
232 |
taatatttaattgtgagaaa |
251 |
Q |
| |
|
|||| || |||| |||||| |
|
|
| T |
817 |
aaataattgattgcgagaaa |
836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 73223 - 73111
Alignment:
| Q |
132 |
ttctgcaatctaaagaacgtgaccttaaaatcatgttctatgttggtttctgttttggatctgtcaacttctcgaggcctgctgctgttggaggaattga |
231 |
Q |
| |
|
|||| ||||||||| | |||||| ||| | ||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
73223 |
ttctccaatctaaaaaccgtgactttagattcatgttctatgttggtttctatttttgatatgtcaacttctagaggcctgctgctattggagacattga |
73124 |
T |
|
| Q |
232 |
taatatttaattg |
244 |
Q |
| |
|
||||||| |||| |
|
|
| T |
73123 |
aaatatttcattg |
73111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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