View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0733_low_113 (Length: 251)

Name: NF0733_low_113
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0733_low_113
NF0733_low_113
[»] chr3 (9 HSPs)
chr3 (1-222)||(27344377-27344598)
chr3 (1-222)||(18722807-18723034)
chr3 (107-186)||(35640158-35640237)
chr3 (1-57)||(27370846-27370902)
chr3 (150-222)||(18030699-18030771)
chr3 (169-208)||(27968036-27968075)
chr3 (169-208)||(28048201-28048240)
chr3 (169-222)||(19468081-19468134)
chr3 (174-222)||(26144555-26144603)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-222)||(72649-72876)
[»] scaffold1344 (1 HSPs)
scaffold1344 (21-222)||(1084-1291)
[»] scaffold0854 (1 HSPs)
scaffold0854 (1-222)||(3691-3933)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 27344377 - 27344598
Alignment:
Q  1 aaaagaattgcagcttggtaatgtgccaaatttcatcgacatatttccagagccttcgtccattaaagggtcatctaattccatttccaagccacaatca 100  Q
    |||||||||| |||||  |  |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  27344377 aaaagaattggagcttcttgttgtgccaaatttcatcaacatatttccagagccttcatccattaaagggtcatctaattccatttccaagctacaatca 27344476  T
Q  101 gaatcagtcaaatctaatacatttgcttggagtcaaatatgttgttatggatacaaatcgagaggcagcacaagtactaaaatcccattggtttctaagg 200  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  27344477 gaatcagtgaaatctaatacattggcttggagtcaaatatgttgttttggatacaaatcgagaggcagcacaagtactaaaatgccactggtttctaagg 27344576  T
Q  201 atcaaccgaaaggctgctcaat 222  Q
    || ||||||||| |||||||||    
T  27344577 atgaaccgaaagactgctcaat 27344598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18723034 - 18722807
Alignment:
Q  1 aaaagaattgcagcttggtaatgtgccaaatttcatcgacatatttccagagccttcgtccattaaagggtcatctaattccatttccaagccacaatca 100  Q
    |||||||||| |||||| | ||||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  18723034 aaaagaattgaagcttgatgatgtgccaaatttcatttacatatttccagagccttcatccattaaagggtcatctgattccatttccaagccacaatca 18722935  T
Q  101 gaat------cagtcaaatctaatacatttgcttggagtcaaatatgttgttatggatacaaatcgagaggcagcacaagtactaaaatcccattggttt 194  Q
    ||||      |||||||||||||||||||  ||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||   ||||||||    
T  18722934 gaattggagccagtcaaatctaatacattctcttggagtcaaatatgttgttatggatacaaattgaaagggagcacaagtactaaaattgtattggttt 18722835  T
Q  195 ctaaggatcaaccgaaaggctgctcaat 222  Q
    || |||||||||| |||| |||||||||    
T  18722834 ctgaggatcaaccaaaagactgctcaat 18722807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 35640237 - 35640158
Alignment:
Q  107 gtcaaatctaatacatttgcttggagtcaaatatgttgttatggatacaaatcgagaggcagcacaagtactaaaatccc 186  Q
    ||||||||||||| |||  ||||||||||||||||||||||| | ||||||| |||||||||||||| ||| || |||||    
T  35640237 gtcaaatctaatatattctcttggagtcaaatatgttgttatcggtacaaattgagaggcagcacaattacaaacatccc 35640158  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27370846 - 27370902
Alignment:
Q  1 aaaagaattgcagcttggtaatgtgccaaatttcatcgacatatttccagagccttc 57  Q
    |||||||||| |||||| | ||||||||| ||||||||||||||||||| |||||||    
T  27370846 aaaagaattgaagcttgatcatgtgccaattttcatcgacatatttccaaagccttc 27370902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 18030771 - 18030699
Alignment:
Q  150 gatacaaatcgagaggcagcacaagtactaaaatcccattggtttctaaggatcaaccgaaaggctgctcaat 222  Q
    ||||||||| ||| |||  |||||||||| ||||| ||||||||||| ||| ||||||||||| || ||||||    
T  18030771 gatacaaattgaggggccccacaagtactgaaatctcattggtttctgagggtcaaccgaaagacttctcaat 18030699  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 27968036 - 27968075
Alignment:
Q  169 cacaagtactaaaatcccattggtttctaaggatcaaccg 208  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  27968036 cacaagtactgaaatcccattggtttctgaggatcaaccg 27968075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 28048201 - 28048240
Alignment:
Q  169 cacaagtactaaaatcccattggtttctaaggatcaaccg 208  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  28048201 cacaagtactaaaatcccattggtttatgaggatcaaccg 28048240  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 19468081 - 19468134
Alignment:
Q  169 cacaagtactaaaatcccattggtttctaaggatcaaccgaaaggctgctcaat 222  Q
    |||||||||| ||||| ||||||||||| ||| ||||||||||| || ||||||    
T  19468081 cacaagtactgaaatctcattggtttctgagggtcaaccgaaagacttctcaat 19468134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 26144603 - 26144555
Alignment:
Q  174 gtactaaaatcccattggtttctaaggatcaaccgaaaggctgctcaat 222  Q
    |||| |||||||||||||||||| ||||||||||| ||  |||||||||    
T  26144603 gtacaaaaatcccattggtttctgaggatcaaccgcaaaactgctcaat 26144555  T

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Target: scaffold0043 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 72876 - 72649
Alignment:
Q  1 aaaagaattgcagcttggtaatgtgccaaatttcatcgacatatttccagagccttcgtccattaaagggtcatctaattccatttccaagccacaatca 100  Q
    |||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  72876 aaaacaattggagcttgatgatgtgccaaatttcatcgacatatttccagagccttcatccattaaagggtcatctaattccatttccaagccacaaaca 72777  T
Q  101 gaat------cagtcaaatctaatacatttgcttggagtcaaatatgttgttatggatacaaatcgagaggcagcacaagtactaaaatcccattggttt 194  Q
     |||      |||||||||||||||||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||  |||||||||    
T  72776 aaattggaaccagtcaaatctaatacattctcttggagtcaaatatgttgttacggaaacaaatcgagaggcagcacaagtactaaaatgtcattggttt 72677  T
Q  195 ctaaggatcaaccgaaaggctgctcaat 222  Q
    |||||||||||||||||| |||||||||    
T  72676 ctaaggatcaaccgaaagactgctcaat 72649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 1084 - 1291
Alignment:
Q  21 atgtgccaaatttcatcgacatatttccagagccttcgtccattaaagggtcatctaattccatttccaagccacaatcagaat------cagtcaaatc 114  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||    
T  1084 atgtgccaaatttcatcgacatatttccagaggctttgtccattaaagggtcatctaattccatttccaagccacaatcagaattggagccagtcaaatc 1183  T
Q  115 taatacatttgcttggagtcaaatatgttgttatggatacaaatcgagaggcagcacaagtactaaaatcccattggtttctaaggatcaaccgaaaggc 214  Q
    ||| |||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||| |    
T  1184 taaaacattctcttggagtcaaatatgttgttatggatacaaatcgagaggcaggacaagtactaaaatgccattggtttctaacaatcaaccgaaagac 1283  T
Q  215 tgctcaat 222  Q
    ||||||||    
T  1284 tgctcaat 1291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3933 - 3691
Alignment:
Q  1 aaaagaattgcagcttggtaatgtgccaaatttcatcgacatatttccaga---------------gccttcgtccattaaagggtcatctaattccatt 85  Q
    |||||||||||||||| ||  |||||| |||||||||||||||||||||||               ||||||  |||||||||||||||||||||| |||    
T  3933 aaaagaattgcagcttagttgtgtgccgaatttcatcgacatatttccagaatcgtctcattccatgccttcacccattaaagggtcatctaattcaatt 3834  T
Q  86 tccaagccacaatcagaat------cagtcaaatctaatacatttgcttggagtcaaatatgttgttatggatacaaatcgagaggcagcacaagtacta 179  Q
    |||||||||||||||||||       ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3833 tccaagccacaatcagaattggagcaagtcaaatctaatacattctcttggagtcaaatatgttgttatggatacaaatcgagaggcagctcaagtacta 3734  T
Q  180 aaatcccattggtttctaaggatcaaccgaaaggctgctcaat 222  Q
    ||||||||||||||||| ||||||| || |||| |||||||||    
T  3733 aaatcccattggtttctgaggatcatccaaaagactgctcaat 3691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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