View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_114 (Length: 251)
Name: NF0733_low_114
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_114 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 34421557 - 34421466
Alignment:
| Q |
13 |
aatataaggttccgaaagcgctaacaaatatatttacatattagactattgcaccaagaatgagaaaaatatatttattcattacatgtgta |
104 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34421557 |
aatataaggttccgaaaacgctaacaaatatatttacatattagactctcgcatcaagaatgagaaaaatatatttatacattacatgtgta |
34421466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 34421395 - 34421318
Alignment:
| Q |
165 |
ggaatataggtttgggcaaaatgcgagaaaaaattaacaattaagttaagtaattgtgcatgtatcattttcaaatttg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34421395 |
ggaatataggtttgggcaaaatgcgagaaaaaattaacaattaagttaagtaa-tgtgcatgtatcattttcaaatttg |
34421318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3444 times since January 2019
Visitors: 4814