View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_116 (Length: 251)
Name: NF0733_low_116
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_116 |
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| [»] scaffold0128 (2 HSPs) |
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Alignment Details
Target: scaffold0128 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 10601 - 10423
Alignment:
| Q |
16 |
catcaagatattgatttcttccaacctagcttgctagctaactccaatagagaaggtttcacttcaaaggtatactaaatatagaatataaatttataaa |
115 |
Q |
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| T |
10601 |
catcaagatattgatttctttcaacctagcttgcta----attctaatagagaaggtttcacttcaaaggtaaactaaatatagaatataaatttataaa |
10506 |
T |
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| Q |
116 |
aacatccataatcaatttgagataagaaaagatctttgtcgcttcagtgtatttaattagctttgtattaactacaactatta |
198 |
Q |
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| T |
10505 |
aacatccataatcaatttgagataagaaaagatctttgtcgcttcagtgtatttaattagctttgtattaactacaactatta |
10423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 27961 - 27780
Alignment:
| Q |
68 |
aaggtttcacttcaaaggtatactaaatatagaatataaatttataaaaacatccataatcaatttgagataagaaaagatc-tttgtcgcttcagtgta |
166 |
Q |
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| T |
27961 |
aaggtttcacttcaaagatatacaaaatatagaatataaatttataaaaacgttcataatcaatttgagataagaaaagatcttttgtagcgtcagtgta |
27862 |
T |
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| Q |
167 |
tttaattagctttgtattaactacaactattactatctgtagctataattattaacaaaatgtaggatttaatgttaaagtgtta |
251 |
Q |
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| T |
27861 |
gttaattagcttagtattaactacaacaat---tttttttagctagaattaataacaaaatgtaacatttaattttaaaatgtta |
27780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 22471824 - 22471892
Alignment:
| Q |
168 |
ttaattagctttgtattaactacaactattactatctgtagctataattattaacaaaatgtaggatttaat |
239 |
Q |
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| T |
22471824 |
ttaattagcttagtattaactacaacaat---tatttgcagctagaattaataacaaaatgtagcatttaat |
22471892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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