View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0733_low_117 (Length: 251)
Name: NF0733_low_117
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_117 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 30621968 - 30621750
Alignment:
| Q |
31 |
accttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattgaaatatgtttttggtgcagtaaga |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30621968 |
accttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattgaaatatgtttttggtgtagtaaga |
30621869 |
T |
|
| Q |
131 |
aggtgttcaataagctccataatnnnnnnnnnttcaaacgaacacttttaagcaattaatgatagtaagctaaataagctaattaatctcagacacgtat |
230 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30621868 |
aggtgttcaataagctccataat--aaaaaatttcaaatgaacacttttaagcaattagtgatagtaagctaaataagctaattaatctcagccacgtat |
30621771 |
T |
|
| Q |
231 |
gctagagtacaaaacgtacaa |
251 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
30621770 |
gctagagtacaacacgtacaa |
30621750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 28044986 - 28045082
Alignment:
| Q |
34 |
ttctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaatttaattcattgaaatatgtttttggtgcagtaagaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
28044986 |
ttctatatttacttttcaaatagaaaaagaatcaattaaatttaattgcattgaattttaaattaattca-tgaaatatgtttttggtgtggtaagaa |
28045082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 17542991 - 17543053
Alignment:
| Q |
35 |
tctatatttacttttcaaatagaaaaagaatcaattgaatttaattgcattgatttttaattt |
97 |
Q |
| |
|
|||||||| || ||| |||| || |||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
17542991 |
tctatattaacattttaaattgacaaagaatcaaatgaatttaattgcattgatgtttaattt |
17543053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3392 times since January 2019
Visitors: 4813