View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0733_low_128 (Length: 241)
Name: NF0733_low_128
Description: NF0733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0733_low_128 |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13473784 - 13473882
Alignment:
| Q |
1 |
gcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtatagctactactcaccttctcaaatgttggagccatagaagg |
100 |
Q |
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| T |
13473784 |
gcttaacagatttgacaggaagtttagagagaatacag--tacaatatcatcgggtatatagctactactcaccttctcaaatgttggagccatagaagg |
13473881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 13473889 - 13473925
Alignment:
| Q |
96 |
gaaggagtacaactaaatcatgtaagcacaggttctg |
132 |
Q |
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| T |
13473889 |
gaaggagtacaactaaatcatgtaaccacacgttctg |
13473925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9763533 - 9763456
Alignment:
| Q |
1 |
gcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtatagctactactcaccttct |
78 |
Q |
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| T |
9763533 |
gcttaacagatttaacaggaagtttagagagaatacagaaagcaatgtcatctggtatatagctactactaaccttct |
9763456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 40399838 - 40399874
Alignment:
| Q |
67 |
tactcaccttctcaaatgttggagccatagaaggagt |
103 |
Q |
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| T |
40399838 |
tactcaccttctcaaatgttggagccatggaaggagt |
40399874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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